NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF244
Library VS
(Link to library)
Clone ID VSF244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04632-1
Original site URL
Representative seq. ID VSF244P
(Link to Original site)
Representative DNA sequence 
>VSF244 (VSF244Q) /CSM/VS/VSF2-B/VSF244Q.Seq.d/
ACATATTATTATTTAGTTAGTAATAGTTATAAAACANNTTGTNTATTAATTTAAAATCAA
ATAAAAGAAATGGACGTTCAAACTAAATACGGAGCTGGTCAAAATAAAGTATTAGGTGGT
GCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGATATTGCTCTCCCAGAATTAAATCCA
TCNGTACCACAAGCXXXXXXXXXXCACATATTATTATTTAGTTAGTAATAGTTATAAAAC
AAATTGTATATTAATTTAAAATCAAATAAAAGAAATGGACGTTCAAACTAAATACGGAGC
TGGTCAAAATAAAGTATTAGGTGGTGCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGA
TATTGCTCTCCCAGAATTAAATCCATCAGTACCACAAGCAATTCAAAGAGCCAGAAATGC
TTTGAAAATGACACAAAAAGAATTAGCATTTAAAATTAATGAAAGACCAGGTGTAATCAA
TGAATATGAAAGTGGTTCTGCCATCCCAAGTCAAGCTGTTCTTTCAAAATTAGAGAAGGC
TTTGAATGTTAAATTAAGAGGAAAAGAAATTGGCAAACCACTCAAATAAATAGCCAATGT
TCAATTAANAGCCCACTTTAATTATT
sequence update 2001. 3.22
Translated Amino Acid sequence 
tyyylvsnsyktxcxli*NQIKEMDVQTKYGAGQNKVLGGANQKKIVESEEDIALPELNP
SVPQ---

---TYYYLVSNSYKTNCILI*nqikemdvqtkygagqnkvlgganqkkiveseedialpe
lnpsvpqaiqrarnalkmtqkelafkinerpgvineyesgsaipsqavlsklekalnvkl
rgkeigkplk*ianvqlxahfny
Translated Amino Acid sequence (All Frames) 
Frame A:
tyyylvsnsyktxcxli*NQIKEMDVQTKYGAGQNKVLGGANQKKIVESEEDIALPELNP
SVPQ---

---hillfs***l*nklyinlksnkrngrsn*irswsk*sirwcqskkdc*i*rrycspr
iksisttsnsksqkcfendtkrisi*n**ktrcnq*i*kwfchpksscsfkiregfec*i
krkrnwqttqinsqcsixspl*l

Frame B:
hiii*lvivikxxvy*fkik*kkwtfklntelvkiky*vvpikkrllnlkkillsqn*ih
xyhk---

---TYYYLVSNSYKTNCILI*nqikemdvqtkygagqnkvlgganqkkiveseedialpe
lnpsvpqaiqrarnalkmtqkelafkinerpgvineyesgsaipsqavlsklekalnvkl
rgkeigkplk*ianvqlxahfny

Frame C:
illfs***l*nxlxinlksnkrngrsn*irswsk*sirwcqskkdc*i*rrycspriksi
xtts---

---hiii*lvivikqivy*fkik*kkwtfklntelvkiky*vvpikkrllnlkkillsqn
*ihqyhkqfkepeml*k*hkkn*hlklmkdqv*smnmkvvlpsqvklffqn*rrl*mln*
eekklanhsnk*pmfn*xptlii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF244 (VSF244Q) /CSM/VS/VSF2-B/VSF244Q.Seq.d/                       1068   0.0
VSD805 (VSD805Q) /CSM/VS/VSD8-A/VSD805Q.Seq.d/                        789   0.0
SSB862 (SSB862Q) /CSM/SS/SSB8-C/SSB862Q.Seq.d/                        789   0.0
VSJ733 (VSJ733Q) /CSM/VS/VSJ7-B/VSJ733Q.Seq.d/                        773   0.0
VSE783 (VSE783Q) /CSM/VS/VSE7-D/VSE783Q.Seq.d/                        349   3e-95
VHC188 (VHC188Q) /CSM/VH/VHC1-D/VHC188Q.Seq.d/                         38   0.16
VHB648 (VHB648Q) /CSM/VH/VHB6-B/VHB648Q.Seq.d/                         38   0.16
SLH381 (SLH381Q) /CSM/SL/SLH3-D/SLH381Q.Seq.d/                         38   0.16
FC-BG24 (FC-BG24Q) /CSM/FC/FC-BG/FC-BG24Q.Seq.d/                       38   0.16
VSE471 (VSE471Q) /CSM/VS/VSE4-C/VSE471Q.Seq.d/                         36   0.62
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X15385|X15385.1 Dictyostelium discoideum H7 gene mRNA.           555  0.0  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   208  0.0  12
AR353936|AR353936.1 Sequence 54 from patent US 6593114.           34  0.007  5
AC024261|AC024261.6 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete sequence.    36  0.034  5
AX251459|AX251459.1 Sequence 427 from Patent WO0168912.           36  0.035  3
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34  0.096  10
AX768418|AX768418.1 Sequence 4 from Patent WO03011899.            34  0.11  3
AR271569|AR271569.1 Sequence 1 from patent US 6503729.            38  0.13  15
AC110581|AC110581.1 Homo sapiens chromosome 8 clone RP11-765A8 map 8, LOW-PASS SEQUENCE SAMPLING.    38  0.14  2
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    36  0.25  7
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14327) RecName: Full=Vegetative-specific protein H7;                202   6e-51
S07568(S07568) protein H7 - slime mold (Dictyostelium discoideum...   201   2e-50
(Q752P7) RecName: Full=Multiprotein-bridging factor 1;  &AE01681...    98   2e-19
FM992688_97(FM992688|pid:none) Candida dubliniensis CD36 chromos...    97   5e-19
FN392322_749(FN392322|pid:none) Pichia pastoris GS115 chromosome...    96   1e-18
(Q6FJN0) RecName: Full=Multiprotein-bridging factor 1;  &CR38095...    95   1e-18
(Q6CIP4) RecName: Full=Multiprotein-bridging factor 1;  &CR38212...    94   2e-18
CU928175_34(CU928175|pid:none) Zygosaccharomyces rouxii strain C...    92   9e-18
BT079498_1(BT079498|pid:none) Esox lucius clone eluc-evq-507-345...    92   1e-17
BT074338_1(BT074338|pid:none) Oncorhynchus mykiss clone omyk-evo...    92   2e-17
protein update 2009. 7.31
PSORT 

 psg: 0.63  gvh: 0.28  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: nuclear
	 20.0 %: plasma membrane
	 16.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VSF244 is nuc
5' end seq. ID VSF244F
5' end seq. 
>VSF244F.Seq
ACATATTATTATTTAGTTAGTAATAGTTATAAAACANNTTGTNTATTAATTTAAAATCAA
ATAAAAGAAATGGACGTTCAAACTAAATACGGAGCTGGTCAAAATAAAGTATTAGGTGGT
GCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGATATTGCTCTCCCAGAATTAAATCCA
TCNGTACCACAAGC----------
Length of 5' end seq. 194
3' end seq. ID VSF244Z
3' end seq. 
>VSF244Z.Seq
----------CACATATTATTATTTAGTTAGTAATAGTTATAAAACAAATTGTATATTAA
TTTAAAATCAAATAAAAGAAATGGACGTTCAAACTAAATACGGAGCTGGTCAAAATAAAG
TATTAGGTGGTGCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGATATTGCTCTCCCAG
AATTAAATCCATCAGTACCACAAGCAATTCAAAGAGCCAGAAATGCTTTGAAAATGACAC
AAAAAGAATTAGCATTTAAAATTAATGAAAGACCAGGTGTAATCAATGAATATGAAAGTG
GTTCTGCCATCCCAAGTCAAGCTGTTCTTTCAAAATTAGAGAAGGCTTTGAATGTTAAAT
TAAGAGGAAAAGAAATTGGCAAACCACTCAAATAAATAGCCAATGTTCAATTAANAGCCC
ACTTTAATTATT
Length of 3' end seq. 422
Connected seq. ID VSF244P
Connected seq. 
>VSF244P.Seq
ACATATTATTATTTAGTTAGTAATAGTTATAAAACANNTTGTNTATTAATTTAAAATCAA
ATAAAAGAAATGGACGTTCAAACTAAATACGGAGCTGGTCAAAATAAAGTATTAGGTGGT
GCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGATATTGCTCTCCCAGAATTAAATCCA
TCNGTACCACAAGC----------CACATATTATTATTTAGTTAGTAATAGTTATAAAAC
AAATTGTATATTAATTTAAAATCAAATAAAAGAAATGGACGTTCAAACTAAATACGGAGC
TGGTCAAAATAAAGTATTAGGTGGTGCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGA
TATTGCTCTCCCAGAATTAAATCCATCAGTACCACAAGCAATTCAAAGAGCCAGAAATGC
TTTGAAAATGACACAAAAAGAATTAGCATTTAAAATTAATGAAAGACCAGGTGTAATCAA
TGAATATGAAAGTGGTTCTGCCATCCCAAGTCAAGCTGTTCTTTCAAAATTAGAGAAGGC
TTTGAATGTTAAATTAAGAGGAAAAGAAATTGGCAAACCACTCAAATAAATAGCCAATGT
TCAATTAANAGCCCACTTTAATTATT
Length of connected seq. 616
Full length Seq ID -
Full length Seq. -
Length of full length seq. -