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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF243
Library VS
(Link to library)
Clone ID VSF243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15480-1
Original site URL
Representative seq. ID VSF243P
(Link to Original site)
Representative DNA sequence 
>VSF243 (VSF243Q) /CSM/VS/VSF2-B/VSF243Q.Seq.d/
AAACAATGGGTGTTGAAATCACAATTATTAAAGAAGGTAAAGGTAATATTCCACCAGTTG
GTTCAAATGTAACTGTACATTATGTAGGTACTTTAACTAATGGTACCGTTTTTGATTCAT
CAAGAAAGAGAGGCCAACCATTTAATTTTAAACTTGGTGCTGGTCAAGTCATCAAAGGTT
GGGATGAAGGTGTTGCTAAAATGAAAGTTGGTGAAACCTCAAAATTAACCATTAGCCCAG
ATTTTGGATATGGTGCTAGAGGTGCTGGTGGTGTTATTCCACCAAATGCAACACTTGTCT
TTGAAGTAGAATTAATCACATTTAAATAAAGAGATGAAGAATTATTCAAATAAATTTAAG
GGAATTTTAATATTGGTTAACAAATATATTTTCTCGATTATGATTTTTTAAATCAAAAAA
AAAAXXXXXXXXXXAAACAATGGGTGTTGAAATCACAATTATTAAAGAAGGTAAAGGTAA
TATTCCACCAGTTGGTTCAAATGTAACTGTACATTATGTAGGTACTTTAACTAATGGTAC
CGTTTTTGATTCATCAAGAAAGAGAGGCCAACCATTTAATTTTAAACTTGGTGCTGGTCA
AGTCATCAAAGGTTGGGATGAAGGTGTTGCTAAAATGAAAGTTGGTGAAACCTCAAAATT
AACCATTAGCCCAGATTTTGGATATGGTGCTAGAGGTGCTGGTGGTGTTATTCCACCAAA
TGCAACACTTGTCTTTGAAGTAGAATTAATCACATTTAAATAAAGAGATGAAGAATTATT
CAAATAAATTTAAGGGAATTTTAATATNGTTAACAAATATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
tmgveitiikegkgnippvgsnvtvhyvgtltngtvfdssrkrgqpfnfklgagqvikgw
degvakmkvgetskltispdfgygargaggvippnatlvfevelitfk*rdeelfk*i*g
nfnig*QIYFLDYDFLNQKK---

---TMGVEITIIKEGKGNIPPVGSNVTVHYVGTLTNGTVFDSSRKRGQPFNFKLGAGQVI
KGWDEGVAKMKVGETSKLTISPDFGYGARGAGGVIPPNATLVFEVELITFK*rdeelfk*
i*gnfnxvnky
Translated Amino Acid sequence (All Frames) 
Frame A:
kqwvlksqllkkvkvifhqlvqm*lyim*vl*lmvpflihqereanhlilnlvlvksskv
gmkvllk*klvkpqn*plaqildmvlevlvvlfhqmqhlslk*n*shlnkemknysnkfk
gililvnkyifsimif*ikkk---

---kqwvlksqllkkvkvifhqlvqm*lyim*vl*lmvpflihqereanhlilnlvlvks
skvgmkvllk*klvkpqn*plaqildmvlevlvvlfhqmqhlslk*n*shlnkemknysn
kfkgilixltni

Frame B:
nngc*nhny*rr*r*ystswfkcnctlcryfn*wyrf*fikkerpti*f*twcwsshqrl
g*rcc*nesw*nlkinh*prfwiwc*rcwwcystkcntcl*srinhi*ikr*riiqinlr
ef*ywltnifsrl*ffkskkk---

---nngc*nhny*rr*r*ystswfkcnctlcryfn*wyrf*fikkerpti*f*twcwssh
qrlg*rcc*nesw*nlkinh*prfwiwc*rcwwcystkcntcl*srinhi*ikr*riiqi
nlref*yx*qi

Frame C:
tmgveitiikegkgnippvgsnvtvhyvgtltngtvfdssrkrgqpfnfklgagqvikgw
degvakmkvgetskltispdfgygargaggvippnatlvfevelitfk*rdeelfk*i*g
nfnig*QIYFLDYDFLNQKK---

---TMGVEITIIKEGKGNIPPVGSNVTVHYVGTLTNGTVFDSSRKRGQPFNFKLGAGQVI
KGWDEGVAKMKVGETSKLTISPDFGYGARGAGGVIPPNATLVFEVELITFK*rdeelfk*
i*gnfnxvnky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF517 (VSF517Q) /CSM/VS/VSF5-A/VSF517Q.Seq.d/                        821   0.0
VSF243 (VSF243Q) /CSM/VS/VSF2-B/VSF243Q.Seq.d/                        821   0.0
VFE394 (VFE394Q) /CSM/VF/VFE3-D/VFE394Q.Seq.d/                        821   0.0
VSJ835 (VSJ835Q) /CSM/VS/VSJ8-B/VSJ835Q.Seq.d/                        815   0.0
VSA260 (VSA260Q) /CSM/VS/VSA2-C/VSA260Q.Seq.d/                        805   0.0
VSG667 (VSG667Q) /CSM/VS/VSG6-C/VSG667Q.Seq.d/                        801   0.0
VSD731 (VSD731Q) /CSM/VS/VSD7-B/VSD731Q.Seq.d/                        793   0.0
FC-BS02 (FC-BS02Q) /CSM/FC/FC-BS/FC-BS02Q.Seq.d/                      767   0.0
VHD376 (VHD376Q) /CSM/VH/VHD3-D/VHD376Q.Seq.d/                        757   0.0
VSE335 (VSE335Q) /CSM/VS/VSE3-B/VSE335Q.Seq.d/                        367   e-100
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   258  0.0  12
AW773430|AW773430.1 rp08d05.y1 Kloek Brook Zeldia punctata SL1 Zeldia punctata cDNA 5' similar to WP:Y18D10A.19C CE21417 ;, mRNA sequence.    64  2e-08  2
CB909775|CB909775.1 USDA-FP_101518 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-21_G11 5', mRNA sequence.    54  2e-08  3
CD451091|CD451091.1 USDA-FP_103145 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_B01 5', mRNA sequence.    54  2e-08  3
CD450786|CD450786.1 USDA-FP_102764 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-38_B02 5', mRNA sequence.    54  4e-08  3
CD451804|CD451804.1 USDA-FP_104110 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-51_A11 5', mRNA sequence.    54  4e-08  3
CB814948|CB814948.1 USDA-FP_100421 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-06_E11 5', mRNA sequence.    54  4e-08  3
BP186674|BP186674.1 Dugesia japonica cDNA, clone: 01257_HH, expressed in the head.    38  1e-07  4
M84759|M84759.1 Candida albicans rapamycin-binding protein (RBPI) gene, complete cds.    66  7e-07  1
CB909815|CB909815.1 USDA-FP_101558 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-22_C10 5', mRNA sequence.    54  9e-07  2
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AX781300_1(AX781300|pid:none) Sequence 1 from Patent WO03029827.      120   5e-55
FJ362380_14(FJ362380|pid:none) Caenorhabditis sp. PS1010 contig ...   122   2e-52
EU964693_1(EU964693|pid:none) Zea mays clone 280884 peptidyl-pro...   127   4e-38
(Q43207) RecName: Full=70 kDa peptidyl-prolyl isomerase;        ...   114   1e-35
AK103172_1(AK103172|pid:none) Oryza sativa Japonica Group cDNA c...   116   1e-34
CP000806_3024(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   147   3e-34
T06489(T06489) probable peptidylprolyl isomerase (EC 5.2.1.8) FK...   114   1e-33
AK228029_1(AK228029|pid:none) Arabidopsis thaliana mRNA for pept...   112   8e-33
AB015468_3(AB015468|pid:none) Arabidopsis thaliana genomic DNA, ...   112   1e-32
AP004864_23(AP004864|pid:none) Oryza sativa Japonica Group genom...   117   2e-32
protein update 2009. 7.31
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSF243 is cyt
5' end seq. ID VSF243F
5' end seq. 
>VSF243F.Seq
AAACAATGGGTGTTGAAATCACAATTATTAAAGAAGGTAAAGGTAATATTCCACCAGTTG
GTTCAAATGTAACTGTACATTATGTAGGTACTTTAACTAATGGTACCGTTTTTGATTCAT
CAAGAAAGAGAGGCCAACCATTTAATTTTAAACTTGGTGCTGGTCAAGTCATCAAAGGTT
GGGATGAAGGTGTTGCTAAAATGAAAGTTGGTGAAACCTCAAAATTAACCATTAGCCCAG
ATTTTGGATATGGTGCTAGAGGTGCTGGTGGTGTTATTCCACCAAATGCAACACTTGTCT
TTGAAGTAGAATTAATCACATTTAAATAAAGAGATGAAGAATTATTCAAATAAATTTAAG
GGAATTTTAATATTGGTTAACAAATATATTTTCTCGATTATGATTTTTTAAATCAAAAAA
AAAA----------
Length of 5' end seq. 424
3' end seq. ID VSF243Z
3' end seq. 
>VSF243Z.Seq
----------AAACAATGGGTGTTGAAATCACAATTATTAAAGAAGGTAAAGGTAATATT
CCACCAGTTGGTTCAAATGTAACTGTACATTATGTAGGTACTTTAACTAATGGTACCGTT
TTTGATTCATCAAGAAAGAGAGGCCAACCATTTAATTTTAAACTTGGTGCTGGTCAAGTC
ATCAAAGGTTGGGATGAAGGTGTTGCTAAAATGAAAGTTGGTGAAACCTCAAAATTAACC
ATTAGCCCAGATTTTGGATATGGTGCTAGAGGTGCTGGTGGTGTTATTCCACCAAATGCA
ACACTTGTCTTTGAAGTAGAATTAATCACATTTAAATAAAGAGATGAAGAATTATTCAAA
TAAATTTAAGGGAATTTTAATATNGTTAACAAATATA
Length of 3' end seq. 387
Connected seq. ID VSF243P
Connected seq. 
>VSF243P.Seq
AAACAATGGGTGTTGAAATCACAATTATTAAAGAAGGTAAAGGTAATATTCCACCAGTTG
GTTCAAATGTAACTGTACATTATGTAGGTACTTTAACTAATGGTACCGTTTTTGATTCAT
CAAGAAAGAGAGGCCAACCATTTAATTTTAAACTTGGTGCTGGTCAAGTCATCAAAGGTT
GGGATGAAGGTGTTGCTAAAATGAAAGTTGGTGAAACCTCAAAATTAACCATTAGCCCAG
ATTTTGGATATGGTGCTAGAGGTGCTGGTGGTGTTATTCCACCAAATGCAACACTTGTCT
TTGAAGTAGAATTAATCACATTTAAATAAAGAGATGAAGAATTATTCAAATAAATTTAAG
GGAATTTTAATATTGGTTAACAAATATATTTTCTCGATTATGATTTTTTAAATCAAAAAA
AAAA----------AAACAATGGGTGTTGAAATCACAATTATTAAAGAAGGTAAAGGTAA
TATTCCACCAGTTGGTTCAAATGTAACTGTACATTATGTAGGTACTTTAACTAATGGTAC
CGTTTTTGATTCATCAAGAAAGAGAGGCCAACCATTTAATTTTAAACTTGGTGCTGGTCA
AGTCATCAAAGGTTGGGATGAAGGTGTTGCTAAAATGAAAGTTGGTGAAACCTCAAAATT
AACCATTAGCCCAGATTTTGGATATGGTGCTAGAGGTGCTGGTGGTGTTATTCCACCAAA
TGCAACACTTGTCTTTGAAGTAGAATTAATCACATTTAAATAAAGAGATGAAGAATTATT
CAAATAAATTTAAGGGAATTTTAATATNGTTAACAAATATA
Length of connected seq. 811
Full length Seq ID -
Full length Seq. -
Length of full length seq. -