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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF241
Library VS
(Link to library)
Clone ID VSF241
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15053-1
Original site URL
Representative seq. ID VSF241P
(Link to Original site)
Representative DNA sequence 
>VSF241 (VSF241Q) /CSM/VS/VSF2-B/VSF241Q.Seq.d/
AAAAAAAAATGAACCGTAACCACCACCACCCAAATTTTACTGAAAACCTTTTTCAATATG
ATAACTTATTGGAATTTGAATTTGGGAAAAATTGTACAGCAGAATGTATCAAGGAAGTAG
TAGAAAGACTTGAAATGTATAAAACTGCATCAATACTTTATCAATCACTCAAAGTTAACG
AAGATGGTTCCTTACCTCCTTTTCAATTCAGAGATGTATTAAACTACTATATTGGTGAGG
ATCATTTAGTTCAAGATAAAAATATTCAAGATTTCTTTACCATCAATATTTTGGATCTTA
ATTTTCCTGGTACACGAAAAAGAACAGATATCCCAACAAAAAAAGAAGAAAAATAAAAAG
AAAATAATAAAAAATAAAGATCATTGCAAAAATAAGAATAAATAAAAAAAATAAAAAAAA
AATAANTAAAAAAAACAAAAAAAGGXXXXXXXXXXCCGAAAAAAAAATGAACCGTAACCA
CCACCACCCAAATTTTACTGAAAACCTTTTTCAATATGATAACTTATTGGAATTTGAATT
TGGGAAAAATTGTACAGCAGAATGTATCAAGGAAGTAGTAGAAAGACTTGAAATGTATAA
AACTGCATCAATACTTTATCAATCACTCAAAGTTAACGAAGATGGTTCCTTACCTCCTTT
TCAATTCAGAGATGTATTAAACTACTATATTGGTGAGGATCATTTAGTTCAAGATAAAAA
TATTCAAGATTTCTTTACCATCAATATTTTGGATCTTAATTTTCCTGGGACACGAAAAAG
AACAGATATCCCAACAAAAAAAGAAGAAAAATAAAAAGAAAATAATAAAAAATAAAGATC
ATTGCAAAAATAAGAATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
kknep*ppppkfy*kpfsi**ligi*iweklysrmyqgssrkt*nv*ncintlsitqs*r
rwfltsfsiqrcikllyw*gsfssr*kysrflyhqyfgs*fswytkknrypnkkrrkikr
k**KIKIIAKIRINKKNKKKIXKKNKKR---

---EKKMNRNHHHPNFTENLFQYDNLLEFEFGKNCTAECIKEVVERLEMYKTASILYQSL
KVNEDGSLPPFQFRDVLNYYIGEDHLVQDKNIQDFFTINILDLNFPGTRKRTDIPTKKEE
K*kennkk*rslqk*e
Translated Amino Acid sequence (All Frames) 
Frame A:
kkk*tvttttqillktffnmitywnlnlgkivqqnvsrk**kdlkciklhqyfinhsklt
kmvpyllfnsemy*ttilvrii*fkikifkislpsifwiliflvhekeqisqqkkkknkk
kiiknkdhcknknk*kk*kknx*kkqkk---

---pkkk*tvttttqillktffnmitywnlnlgkivqqnvsrk**kdlkciklhqyfinh
skltkmvpyllfnsemy*ttilvrii*fkikifkislpsifwiliflghekeqisqqkkk
knkkkiiknkdhcknkn

Frame B:
kknep*ppppkfy*kpfsi**ligi*iweklysrmyqgssrkt*nv*ncintlsitqs*r
rwfltsfsiqrcikllyw*gsfssr*kysrflyhqyfgs*fswytkknrypnkkrrkikr
k**KIKIIAKIRINKKNKKKIXKKNKKR---

---rkknep*ppppkfy*kpfsi**ligi*iweklysrmyqgssrkt*nv*ncintlsit
qs*rrwfltsfsiqrcikllyw*gsfssr*kysrflyhqyfgs*fswdtkknrypnkkrr
kikrk**kikiiakiri

Frame C:
kkmnrnhhhpnftenlfqydnllefefgknctaecikevverlemyktasilyqslkvne
dgslppfqfrdvlnyyigedhlvqdkniqdfftinildlnfpgtrkrtdiptkkeek*ke
nnkk*rslqk*e*ikkikkk*xkktkk---

---EKKMNRNHHHPNFTENLFQYDNLLEFEFGKNCTAECIKEVVERLEMYKTASILYQSL
KVNEDGSLPPFQFRDVLNYYIGEDHLVQDKNIQDFFTINILDLNFPGTRKRTDIPTKKEE
K*kennkk*rslqk*e
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI472 (VSI472Q) /CSM/VS/VSI4-C/VSI472Q.Seq.d/                        650   0.0
VSF286 (VSF286Q) /CSM/VS/VSF2-D/VSF286Q.Seq.d/                        650   0.0
VSF241 (VSF241Q) /CSM/VS/VSF2-B/VSF241Q.Seq.d/                        650   0.0
CFE241 (CFE241Q) /CSM/CF/CFE2-B/CFE241Q.Seq.d/                        478   e-134
VFI265 (VFI265Q) /CSM/VF/VFI2-C/VFI265Q.Seq.d/                         38   0.22
VSI505 (VSI505Q) /CSM/VS/VSI5-A/VSI505Q.Seq.d/                         36   0.85
VSH415 (VSH415Q) /CSM/VS/VSH4-A/VSH415Q.Seq.d/                         34   3.4
VSG259 (VSG259Q) /CSM/VS/VSG2-C/VSG259Q.Seq.d/                         34   3.4
VSB473 (VSB473Q) /CSM/VS/VSB4-D/VSB473Q.Seq.d/                         34   3.4
VSB379 (VSB379Q) /CSM/VS/VSB3-D/VSB379Q.Seq.d/                         34   3.4
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.   650  0.0  4
AC020671|AC020671.3 Homo sapiens chromosome 18 clone RP11-143A24 map 18, LOW-PASS SEQUENCE SAMPLING.    38  0.002  3
CD860582|CD860582.1 TE.002P05F011204 TE Pisum sativum cDNA clone TE002P05, mRNA sequence.    36  0.061  2
BZ702315|BZ702315.1 PUCEP85TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa128P02, DNA sequence.    38  0.078  2
BJ163279|BJ163279.1 Physcomitrella patens subsp. patens cDNA clone:pph34p14, 5' end, single read.    36  0.11  2
BJ186843|BJ186843.1 Physcomitrella patens subsp. patens cDNA clone:pphb39j02, 5' end, single read.    36  0.18  2
AB062910|AB062910.1 Physcomitrella patens PpGRP2 mRNA for glycine-rich RNA-binding protein, complete cds.    36  0.42  2
AL162832|AL162832.6 Human chromosome 14 DNA sequence BAC R-544I20 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    48  2.2  2
AP003292|AP003292.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02.    34  2.5  4
AL355100|AL355100.2 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-691G13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human).    48  2.5  2
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_22(AC116551|pid:none) Dictyostelium discoideum chromoso...   214   3e-54
AE017308_185(AE017308|pid:none) Mycoplasma mobile 163K complete ...    35   4.2
CP000932_378(CP000932|pid:none) Campylobacter lari RM2100, compl...    34   5.5
(P53243) RecName: Full=Zinc finger protein YGR067C;  &S64362(S64...    33   9.3
protein update 2009. 3.22
PSORT 

 psg: 0.23  gvh: 0.30  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.31  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSF241 is nuc
5' end seq. ID VSF241F
5' end seq. 
>VSF241F.Seq
AAAAAAAAATGAACCGTAACCACCACCACCCAAATTTTACTGAAAACCTTTTTCAATATG
ATAACTTATTGGAATTTGAATTTGGGAAAAATTGTACAGCAGAATGTATCAAGGAAGTAG
TAGAAAGACTTGAAATGTATAAAACTGCATCAATACTTTATCAATCACTCAAAGTTAACG
AAGATGGTTCCTTACCTCCTTTTCAATTCAGAGATGTATTAAACTACTATATTGGTGAGG
ATCATTTAGTTCAAGATAAAAATATTCAAGATTTCTTTACCATCAATATTTTGGATCTTA
ATTTTCCTGGTACACGAAAAAGAACAGATATCCCAACAAAAAAAGAAGAAAAATAAAAAG
AAAATAATAAAAAATAAAGATCATTGCAAAAATAAGAATAAATAAAAAAAATAAAAAAAA
AATAANTAAAAAAAACAAAAAAAGG----------
Length of 5' end seq. 445
3' end seq. ID VSF241Z
3' end seq. 
>VSF241Z.Seq
----------CCGAAAAAAAAATGAACCGTAACCACCACCACCCAAATTTTACTGAAAAC
CTTTTTCAATATGATAACTTATTGGAATTTGAATTTGGGAAAAATTGTACAGCAGAATGT
ATCAAGGAAGTAGTAGAAAGACTTGAAATGTATAAAACTGCATCAATACTTTATCAATCA
CTCAAAGTTAACGAAGATGGTTCCTTACCTCCTTTTCAATTCAGAGATGTATTAAACTAC
TATATTGGTGAGGATCATTTAGTTCAAGATAAAAATATTCAAGATTTCTTTACCATCAAT
ATTTTGGATCTTAATTTTCCTGGGACACGAAAAAGAACAGATATCCCAACAAAAAAAGAA
GAAAAATAAAAAGAAAATAATAAAAAATAAAGATCATTGCAAAAATAAGAATA
Length of 3' end seq. 403
Connected seq. ID VSF241P
Connected seq. 
>VSF241P.Seq
AAAAAAAAATGAACCGTAACCACCACCACCCAAATTTTACTGAAAACCTTTTTCAATATG
ATAACTTATTGGAATTTGAATTTGGGAAAAATTGTACAGCAGAATGTATCAAGGAAGTAG
TAGAAAGACTTGAAATGTATAAAACTGCATCAATACTTTATCAATCACTCAAAGTTAACG
AAGATGGTTCCTTACCTCCTTTTCAATTCAGAGATGTATTAAACTACTATATTGGTGAGG
ATCATTTAGTTCAAGATAAAAATATTCAAGATTTCTTTACCATCAATATTTTGGATCTTA
ATTTTCCTGGTACACGAAAAAGAACAGATATCCCAACAAAAAAAGAAGAAAAATAAAAAG
AAAATAATAAAAAATAAAGATCATTGCAAAAATAAGAATAAATAAAAAAAATAAAAAAAA
AATAANTAAAAAAAACAAAAAAAGG----------CCGAAAAAAAAATGAACCGTAACCA
CCACCACCCAAATTTTACTGAAAACCTTTTTCAATATGATAACTTATTGGAATTTGAATT
TGGGAAAAATTGTACAGCAGAATGTATCAAGGAAGTAGTAGAAAGACTTGAAATGTATAA
AACTGCATCAATACTTTATCAATCACTCAAAGTTAACGAAGATGGTTCCTTACCTCCTTT
TCAATTCAGAGATGTATTAAACTACTATATTGGTGAGGATCATTTAGTTCAAGATAAAAA
TATTCAAGATTTCTTTACCATCAATATTTTGGATCTTAATTTTCCTGGGACACGAAAAAG
AACAGATATCCCAACAAAAAAAGAAGAAAAATAAAAAGAAAATAATAAAAAATAAAGATC
ATTGCAAAAATAAGAATA
Length of connected seq. 848
Full length Seq ID -
Full length Seq. -
Length of full length seq. -