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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF232
Library VS
(Link to library)
Clone ID VSF232
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12366-1
Original site URL
Representative seq. ID VSF232P
(Link to Original site)
Representative DNA sequence 
>VSF232 (VSF232Q) /CSM/VS/VSF2-B/VSF232Q.Seq.d/
CACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCTGCCGTACTGG
TTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCCAAGGTAAAGA
AAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCTTATGTTTACT
CGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTATTTTTTAAAT
AAAAGACGTTATAATATATAAAAAAAAGCTATTTTATTTTTAAAATAAAAAAAAAAXXXX
XXXXXXCACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCTGCCG
TACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCCAAGG
TAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCTTATG
TTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTATTTT
TTAAATAAAAGACGTTATAATATATAAAAAAAAGCT
sequence update 2001. 3.22
Translated Amino Acid sequence 
qlllkpfn*pklpkysavlvpvvpslksvlsf*vlpkvkkely*etlkvqsektisyvys
klnvklvdsvkhflllffk*ktl*YIKKSYFIFKIKKK---

---TAATETVQLAKVTEVLCRTGSRGAVTQVRVEFLGTAQGKERTLLRNVKGPVRKDDIL
CLLETEREARRLR*alfiiif*ikdviiykkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hscy*nrsisqsyrstlpywfpwcrhsspc*vfrycpr*rknfikkr*rssqkrrylmft
rn*t*ss*tplstfyyyflnkrryni*kkailflk*kk---

---hscy*nrsisqsyrstlpywfpwcrhsspc*vfrycpr*rknfikkr*rssqkrryl
mftrn*t*ss*tplstfyyyflnkrryni*kka

Frame B:
taatetvqlakvtevlcrtgsrgavtqvrveflgtaqgkertllrnvkgpvrkddilcll
eterearrlr*alfiiif*ikdviiykkklfyf*nkkk---

---TAATETVQLAKVTEVLCRTGSRGAVTQVRVEFLGTAQGKERTLLRNVKGPVRKDDIL
CLLETEREARRLR*alfiiif*ikdviiykkk

Frame C:
qlllkpfn*pklpkysavlvpvvpslksvlsf*vlpkvkkely*etlkvqsektisyvys
klnvklvdsvkhflllffk*ktl*YIKKSYFIFKIKKK---

---qlllkpfn*pklpkysavlvpvvpslksvlsf*vlpkvkkely*etlkvqsektisy
vysklnvklvdsvkhflllffk*ktl*yikks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ284 (VSJ284Q) /CSM/VS/VSJ2-D/VSJ284Q.Seq.d/                        519   e-146
VSG789 (VSG789Q) /CSM/VS/VSG7-D/VSG789Q.Seq.d/                        519   e-146
VSF232 (VSF232Q) /CSM/VS/VSF2-B/VSF232Q.Seq.d/                        519   e-146
VSE776 (VSE776Q) /CSM/VS/VSE7-D/VSE776Q.Seq.d/                        519   e-146
VSE356 (VSE356Q) /CSM/VS/VSE3-C/VSE356Q.Seq.d/                        519   e-146
VSD137 (VSD137Q) /CSM/VS/VSD1-B/VSD137Q.Seq.d/                        519   e-146
VSD119 (VSD119Q) /CSM/VS/VSD1-A/VSD119Q.Seq.d/                        519   e-146
SSJ523 (SSJ523Q) /CSM/SS/SSJ5-A/SSJ523Q.Seq.d/                        519   e-146
VSJ711 (VSJ711Q) /CSM/VS/VSJ7-A/VSJ711Q.Seq.d/                        517   e-146
VSI295 (VSI295Q) /CSM/VS/VSI2-D/VSI295Q.Seq.d/                        517   e-146
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    62  1e-14  6
X69583|X69583.1 K.marxianus gene for ribosomal protein S33.       40  1e-05  3
AI433542|AI433542.1 ti69g09.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE:2137312 3' similar to contains element MER4 MER4 repetitive element ;, mRNA sequence.    40  4e-05  2
BF436577|BF436577.1 7p07h04.x1 NCI_CGAP_Ov18 Homo sapiens cDNA clone IMAGE:3645175 3' similar to contains Alu repetitive element;, mRNA sequence.    40  6e-05  2
W61144|W61144.1 zd31c01.s1 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone IMAGE:342240 3', mRNA sequence.    40  8e-05  2
AA808323|AA808323.1 oc41h10.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE:1352323 3', mRNA sequence.    40  9e-05  2
BG601370|BG601370.1 EST500460 Plasmodium yoelii sporozoite cDNA Plasmodium yoelii cDNA clone PYCDB51, mRNA sequence.    42  9e-05  2
AI141457|AI141457.1 qa67d06.x1 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone IMAGE:1691819 3', mRNA sequence.    40  9e-05  2
N51524|N51524.1 yy97c07.s1 Soares_multiple_sclerosis_2NbHMSP Homo sapiens cDNA clone IMAGE:281484 3', mRNA sequence.    40  9e-05  2
AA043817|AA043817.1 zk59f11.s1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone IMAGE:487149 3', mRNA sequence.    40  1e-04  2
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MZ5) RecName: Full=40S ribosomal protein S28;                     122   7e-27
CR940352_397(CR940352|pid:none) Theileria annulata strain Ankara...    75   1e-12
CP000496_1031(CP000496|pid:none) Pichia stipitis CBS 6054 chromo...    73   5e-12
AM920436_883(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    73   5e-12
CR382136_616(CR382136|pid:none) Debaryomyces hansenii strain CBS...    73   6e-12
CR382129_187(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    72   1e-11
AM270298_36(AM270298|pid:none) Aspergillus niger contig An13c004...    72   1e-11
(Q10421) RecName: Full=40S ribosomal protein S28; AltName: Full=...    69   7e-11
CU633456_12(CU633456|pid:none) Podospora anserina genomic DNA ch...    69   7e-11
AE014187_583(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    69   9e-11
protein update 2009. 7.31
PSORT 

 psg: 0.57  gvh: 0.44  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VSF232 is nuc
5' end seq. ID VSF232F
5' end seq. 
>VSF232F.Seq
CACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCTGCCGTACTGG
TTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCCAAGGTAAAGA
AAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCTTATGTTTACT
CGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTATTTTTTAAAT
AAAAGACGTTATAATATATAAAAAAAAGCTATTTTATTTTTAAAATAAAAAAAAAA----
------
Length of 5' end seq. 296
3' end seq. ID VSF232Z
3' end seq. 
>VSF232Z.Seq
----------CACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCT
GCCGTACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCC
AAGGTAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCT
TATGTTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTA
TTTTTTAAATAAAAGACGTTATAATATATAAAAAAAAGCT
Length of 3' end seq. 270
Connected seq. ID VSF232P
Connected seq. 
>VSF232P.Seq
CACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCTGCCGTACTGG
TTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCCAAGGTAAAGA
AAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCTTATGTTTACT
CGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTATTTTTTAAAT
AAAAGACGTTATAATATATAAAAAAAAGCTATTTTATTTTTAAAATAAAAAAAAAA----
------CACAGCTGCTACTGAAACCGTTCAATTAGCCAAAGTTACCGAAGTACTCTGCCG
TACTGGTTCCCGTGGTGCCGTCACTCAAGTCCGTGTTGAGTTTTTAGGTACTGCCCAAGG
TAAAGAAAGAACTTTATTAAGAAACGTTAAAGGTCCAGTCAGAAAAGACGATATCTTATG
TTTACTCGAAACTGAACGTGAAGCTCGTAGACTCCGTTAAGCACTTTTTATTATTATTTT
TTAAATAAAAGACGTTATAATATATAAAAAAAAGCT
Length of connected seq. 566
Full length Seq ID -
Full length Seq. -
Length of full length seq. -