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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF229
Library VS
(Link to library)
Clone ID VSF229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06686-1
Original site URL
Representative seq. ID VSF229P
(Link to Original site)
Representative DNA sequence 
>VSF229 (VSF229Q) /CSM/VS/VSF2-B/VSF229Q.Seq.d/
GGTTCACCATTAGAATTACAAAACTGTCACCCAATTTTATGTCTTGATCTTTTTGAACAT
GCTTACGTTTCTGACCATGGTGATAAAAATAAATATATTGCAAATTTCTGGTCATGTATT
AATTGGAAATTTGTTGAAGCCAAATTTTTGAATGCTTTGGTTTCTGATAGAGAATATAAA
TTAAGATTAGAATCTCTTGTTGGAAAACAATCTCATGCATTTGAACAATTTCTTGATTCA
CAATCAAATAATTAATAAAATTAATTTTTAATTAAAAAAAAAAXXXXXXXXXXGGTTCAC
CATTAGAATTACAAAACTGTCACCCAATTTTATGTCTTGATCTTTTTGAACATGCTTACG
TTTCTGACCATGGTGATAAAAATAAATATATTGCAAATTTCTGGTCATGTATTAATTGGA
AATTTGTTGAAGCCAAATTTTTGAATGCTTTGGTTTCTGATAGAGAATATAAATTAAGAT
TAGAATCTCTTGTTGGAAAACAATCTCATGCATTTGAACAATTANTTATTCACAATCAAA
TAATTAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
gsplelqnchpilcldlfehayvsdhgdknkyianfwscinwkfveakflnalvsdreyk
lrleslvgkqshafeqfldsqsnn**n*FLIKKK---

---GSPLELQNCHPILCLDLFEHAYVSDHGDKNKYIANFWSCINWKFVEAKFLNALVSDR
EYKLRLESLVGKQSHAFEQLXIHNQII
Translated Amino Acid sequence (All Frames) 
Frame A:
gsplelqnchpilcldlfehayvsdhgdknkyianfwscinwkfveakflnalvsdreyk
lrleslvgkqshafeqfldsqsnn**n*FLIKKK---

---GSPLELQNCHPILCLDLFEHAYVSDHGDKNKYIANFWSCINWKFVEAKFLNALVSDR
EYKLRLESLVGKQSHAFEQLXIHNQII

Frame B:
vhh*nyktvtqfyvliflnmltfltmvikinilqisghvlignllkpnf*mlwflienin
*d*nlllennlmhlnnflihnqiinkinf*lkkk---

---vhh*nyktvtqfyvliflnmltfltmvikinilqisghvlignllkpnf*mlwflie
nin*d*nlllennlmhlnnxlftik*l

Frame C:
ftiritklspnfms*sf*tclrf*pw**k*iyckflvmy*leic*sqifecfgf**ri*i
kiriscwktisci*tis*ftik*liklifn*kk---

---ftiritklspnfms*sf*tclrf*pw**k*iyckflvmy*leic*sqifecfgf**r
i*ikiriscwktisci*tixysqsnn*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF229 (VSF229Q) /CSM/VS/VSF2-B/VSF229Q.Seq.d/                        541   e-153
VSF203 (VSF203Q) /CSM/VS/VSF2-A/VSF203Q.Seq.d/                        541   e-153
VSA859 (VSA859Q) /CSM/VS/VSA8-C/VSA859Q.Seq.d/                         42   0.009
CFK339 (CFK339Q) /CSM/CF/CFK3-B/CFK339Q.Seq.d/                         40   0.034
VSD253 (VSD253Q) /CSM/VS/VSD2-C/VSD253Q.Seq.d/                         38   0.14
VHQ182 (VHQ182Q) /CSM/VH/VHQ1-D/VHQ182Q.Seq.d/                         38   0.14
VHP848 (VHP848Q) /CSM/VH/VHP8-B/VHP848Q.Seq.d/                         38   0.14
VHP835 (VHP835Q) /CSM/VH/VHP8-B/VHP835Q.Seq.d/                         38   0.14
VHP676 (VHP676Q) /CSM/VH/VHP6-D/VHP676Q.Seq.d/                         38   0.14
VHP631 (VHP631Q) /CSM/VH/VHP6-B/VHP631Q.Seq.d/                         38   0.14
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   367  e-135  7
AC113297|AC113297.2 Mus musculus clone RP23-426D6, WORKING DRAFT SEQUENCE, 23 ordered pieces.    40  0.001  5
AL354666|AL354666.5 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-87L17.    40  0.019  2
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    38  0.041  8
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    34  0.048  8
AC021338|AC021338.4 Homo sapiens clone RP11-24H6, WORKING DRAFT SEQUENCE, 37 unordered pieces.    40  0.063  3
AX196295|AX196295.1 Sequence 2 from Patent WO0151627.             34  0.075  9
AX196296|AX196296.1 Sequence 3 from Patent WO0151627.             34  0.075  9
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38  0.079  6
AC106411|AC106411.4 Rattus norvegicus clone CH230-82H8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38  0.098  3
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_72(AC116977|pid:none) Dictyostelium discoideum chromoso...   178   7e-44
AM743169_1529(AM743169|pid:none) Stenotrophomonas maltophilia K2...    49   9e-05
CP001111_1373(CP001111|pid:none) Stenotrophomonas maltophilia R5...    49   9e-05
CP000302_1626(CP000302|pid:none) Shewanella denitrificans OS217,...    49   1e-04
U39401_1(U39401|pid:none) Trypanosoma cruzi Fe-superoxide dismut...    48   1e-04
(P84612) RecName: Full=Superoxide dismutase [Fe];          EC=1....    47   3e-04
CP000934_2582(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    47   3e-04
AF289824_1(AF289824|pid:none) Gonyaulax polyedra iron superoxide...    47   3e-04
AP008955_1786(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    47   3e-04
GQ120613_1(GQ120613|pid:none) Psychromonas arctica strain KOPRI_...    47   4e-04
protein update 2009. 7.31
PSORT 

 psg: 0.80  gvh: 0.45  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSF229 is cyt
5' end seq. ID VSF229F
5' end seq. 
>VSF229F.Seq
GGTTCACCATTAGAATTACAAAACTGTCACCCAATTTTATGTCTTGATCTTTTTGAACAT
GCTTACGTTTCTGACCATGGTGATAAAAATAAATATATTGCAAATTTCTGGTCATGTATT
AATTGGAAATTTGTTGAAGCCAAATTTTTGAATGCTTTGGTTTCTGATAGAGAATATAAA
TTAAGATTAGAATCTCTTGTTGGAAAACAATCTCATGCATTTGAACAATTTCTTGATTCA
CAATCAAATAATTAATAAAATTAATTTTTAATTAAAAAAAAAA----------
Length of 5' end seq. 283
3' end seq. ID VSF229Z
3' end seq. 
>VSF229Z.Seq
----------GGTTCACCATTAGAATTACAAAACTGTCACCCAATTTTATGTCTTGATCT
TTTTGAACATGCTTACGTTTCTGACCATGGTGATAAAAATAAATATATTGCAAATTTCTG
GTCATGTATTAATTGGAAATTTGTTGAAGCCAAATTTTTGAATGCTTTGGTTTCTGATAG
AGAATATAAATTAAGATTAGAATCTCTTGTTGGAAAACAATCTCATGCATTTGAACAATT
ANTTATTCACAATCAAATAATTAA
Length of 3' end seq. 254
Connected seq. ID VSF229P
Connected seq. 
>VSF229P.Seq
GGTTCACCATTAGAATTACAAAACTGTCACCCAATTTTATGTCTTGATCTTTTTGAACAT
GCTTACGTTTCTGACCATGGTGATAAAAATAAATATATTGCAAATTTCTGGTCATGTATT
AATTGGAAATTTGTTGAAGCCAAATTTTTGAATGCTTTGGTTTCTGATAGAGAATATAAA
TTAAGATTAGAATCTCTTGTTGGAAAACAATCTCATGCATTTGAACAATTTCTTGATTCA
CAATCAAATAATTAATAAAATTAATTTTTAATTAAAAAAAAAA----------GGTTCAC
CATTAGAATTACAAAACTGTCACCCAATTTTATGTCTTGATCTTTTTGAACATGCTTACG
TTTCTGACCATGGTGATAAAAATAAATATATTGCAAATTTCTGGTCATGTATTAATTGGA
AATTTGTTGAAGCCAAATTTTTGAATGCTTTGGTTTCTGATAGAGAATATAAATTAAGAT
TAGAATCTCTTGTTGGAAAACAATCTCATGCATTTGAACAATTANTTATTCACAATCAAA
TAATTAA
Length of connected seq. 537
Full length Seq ID -
Full length Seq. -
Length of full length seq. -