VSF217 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VSF217
Library	VS (Link to library)
Clone ID	VSF217 (Link to dictyBase)
Atlas ID	-
NBRP ID	G00990
dictyBase ID	DDB0231218
Link to Contig	Contig-U14239-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VS/VSF2-A/VSF217Q.Seq.d/
Representative seq. ID	VSF217E (Link to Original site)
Representative DNA sequence	>VSF217 (VSF217Q) /CSM/VS/VSF2-A/VSF217Q.Seq.d/ CAAAATATAATTAAAATTATTCAAAAATCCAATAAACGTTATTTTTCATCATCAAATGAA TTAAAAAAAACAGCATTAAATGAATTACATAAAGAATTAGGAGCAAAAATGGTACCATTT TGTGGATGGGAAATGCCGGTTCAATATCCAGCAGGTGTTATGAAAGAACATTTACATGTT AGAAAAGAGAGTGGATTATTTGATGTTTCTCATATGGGACAATTAAGAATTCATGGTAAA GATCGTGTTAAATTCTTTGAGTCAATTGTAGTAGCAGATTTACAAGCATTACCAACTGGA CATTCAAAATTATCAGTATTCACCAATGAGAAAGGTGGTATCATCGATGACACAATGATT ACCAATGCTGGTGATTCATTGTATGTAGTTGTCAATGCAGGTTGTGCAGATAAAGATATT TCACATATTAATGAAAAGATTAAAGAATTCAAATCTGTCAATCCAACACACGATGTAAGT ATGCAATTATTGGAAGATCTCTCATTGATCGCTATCCAAGGTCCAACCACTGAATCAATA TTACAAAAATTCGTAAAAGATCAAGATATTACCAATATGGAATTTATGACACAACGTCCA ATGACAATCGCAGGTATCGATTGCATAGTGACACGTTGTGGTTACACAGGTGAAGATGGT TTTGAAATTTCCGTACCATCAAAACAAGCCGTACGATTGGCTGAATTGTTTTTAGCAACT AGTAATGCCTCAATTGAAAGTGGTATTAAACCAGCTGGTTTAGGTGCTAGAGATTCACTT CGTTTAGAAGCTGGTCTCTGTTTGTATGGTCATGATTTAAATGATGATATCACTCCAATC GAAGCATCACTCAATTGGTTAATTAGTAAACGTCGTAGAGAAGAAGGTGGTTTCCCAGGT GCTTCAATCATTCAAAAACAATTACAAAAGGATGGTTGTCCACAAAAACGTGTTGGTGTC ATCATCAATGGTGCTCCTGCTCGTGAAGGTTGTTTAATCCTCGACCCTTCAACAAACCCA AGAAATCGGTAAAGTCACAAGTGGCACTATCTCCCCAATCACCCGTCAATCAATCTCAAT GGCATACGTTAAAACTCCTTTCTCTAAAATCGGTACTCAAGTCAATGTTTCAATTCGTGG TAAACCAATTACTGCCACAATTTCAAAAATGCCGTTTGTCCCAACAAATTATAAAAAATT ATAAAAAATTATAAAAAATTATAAAAAAAAAAAAA
sequence update	2002. 8. 2
Translated Amino Acid sequence	QNIIKIIQKSNKRYFSSSNELKKTALNELHKELGAKMVPFCGWEMPVQYPAGVMKEHLHV RKESGLFDVSHMGQLRIHGKDRVKFFESIVVADLQALPTGHSKLSVFTNEKGGIIDDTMI TNAGDSLYVVVNAGCADKDISHINEKIKEFKSVNPTHDVSMQLLEDLSLIAIQGPTTESI LQKFVKDQDITNMEFMTQRPMTIAGIDCIVTRCGYTGEDGFEISVPSKQAVRLAELFLAT SNASIESGIKPAGLGARDSLRLEAGLCLYGHDLNDDITPIEASLNWLISKRRREEGGFPG ASIIQKQLQKDGCPQKRVGVIINGAPAREGCLILDPSTNPRNRshkwhylpnhpsinln girnsflnryssqcfnswtnychnfknavcpnklkiiknykklkkk
Translated Amino Acid sequence (All Frames)	Frame A: QNIIKIIQKSNKRYFSSSNELKKTALNELHKELGAKMVPFCGWEMPVQYPAGVMKEHLHV RKESGLFDVSHMGQLRIHGKDRVKFFESIVVADLQALPTGHSKLSVFTNEKGGIIDDTMI TNAGDSLYVVVNAGCADKDISHINEKIKEFKSVNPTHDVSMQLLEDLSLIAIQGPTTESI LQKFVKDQDITNMEFMTQRPMTIAGIDCIVTRCGYTGEDGFEISVPSKQAVRLAELFLAT SNASIESGIKPAGLGARDSLRLEAGLCLYGHDLNDDITPIEASLNWLISKRRREEGGFPG ASIIQKQLQKDGCPQKRVGVIINGAPAREGCLILDPSTNPRNRshkwhylpnhpsinln girnsflnryssqcfnswtnychnfknavcpnklkiiknykklkkk Frame B: kilklfknpinvifhhqmnkkqhmnyikneqkwyhfvdgkcrfniqqvlkniyml ekrvdylmfliwdnefmvkivlnslsql*qiykhyqldiqnyqyspmrkvvssmtql pmlvihcmlsmqvvqikifhilmkrlknsnlsiqhtmvcnywkishslskvqplnqy yknskikilpiwnlhnvqqsqvsia*hvvvtqvkmvlkfpyhqnkpydwlncfql vmpqlkvvlnqlvvleihfvklvsvcmvmimmislqskhhsiglvnvvekkvvsqv lqsfknnykrmvvhknvlvsssmvlllvkvvsstlqqtqeigkvtsgtispitrqsism ayvktpfskigtqvnvsirgkpitatiskmpfvptnykklkiiknykkkk Frame C: kynnyskiqtlffiikikknsikitrirskngtilwmgnagsissrcyertftc krewiicfsygtiknswrscilvncssrftsitnwtfkiisihqerwyhrhndy qcwfivcscqcrlcrryfty*kdriqicqsntrckyaiigrslidryprsnhini tkirkrsryyqygiydttsndnrryrlhsdtlwlhrrwfnfrtiktsrtigivfsn* clnkwytswfrcrftsfrswslfvwsfkyhsnrsitqlvntsrrrwfprc fnhsktitkgwlstktcwchhqwcscsrlfnprpfnkpkksvksqvalspqspvnqsqw htlkllslksvlksmfqfvvnqllpqfqkcrlsqqiiknykklkiikkkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VSF217 (VSF217Q) /CSM/VS/VSF2-A/VSF217Q.Seq.d/ 2302 0.0 VFC666 (VFC666Q) /CSM/VF/VFC6-C/VFC666Q.Seq.d/ 2194 0.0 CHA357 (CHA357Q) /CSM/CH/CHA3-C/CHA357Q.Seq.d/ 1300 0.0 CHA757 (CHA757Q) /CSM/CH/CHA7-C/CHA757Q.Seq.d/ 1120 0.0 SSD175 (SSD175Q) /CSM/SS/SSD1-D/SSD175Q.Seq.d/ 44 0.005 AHA126 (AHA126Q) /CSM/AH/AHA1-B/AHA126Q.Seq.d/ 40 0.079 VSJ224 (VSJ224Q) /CSM/VS/VSJ2-A/VSJ224Q.Seq.d/ 36 1.2 VSI403 (VSI403Q) /CSM/VS/VSI4-A/VSI403Q.Seq.d/ 36 1.2 VSH629 (VSH629Q) /CSM/VS/VSH6-B/VSH629Q.Seq.d/ 36 1.2 VSG813 (VSG813Q) /CSM/VS/VSG8-A/VSG813Q.Seq.d/ 36 1.2
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N L41522\|L41522.1 Saccharomyces cerevisiae glycine cleavage T protein (GCV1) gene, complete cds. 42 2e-06 3 Z74315\|Z74315.1 S.cerevisiae chromosome IV reading frame ORF YDR019c. 42 2e-06 3 Z49770\|Z49770.1 S.cerevisiae chromosome IV cosmid 9335. 42 6e-05 3 X95966\|X95966.1 S.cerevisiae 35.4kb DNA region on left arm of chromosome IV. 42 4e-04 4 Z25858\|Z25858.1 F.pringlei mRNA for T subunit of glycine decarboxylase multi-enzyme complex. 36 8e-04 3 BI437090\|BI437090.1 gc55f06.y1 Moss EST library PPN Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPN191111 5' similar to SW:GCST_FLATR O23936 AMINOMETHYLTRANSFERASE PRECURSOR ;, mRNA sequence. 56 0.001 1 BQ040978\|BQ040978.1 gd32b09.y1 Moss EST library PPS Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPS90317 5' similar to SW:GCST_FLAAN O49849 AMINOMETHYLTRANSFERASE PRECURSOR ;, mRNA sequence. 56 0.001 1 BI406068\|BI406068.1 147G10 Mature tuber lambda ZAP Solanum tuberosum cDNA, mRNA sequence. 44 0.001 2 AW647813\|AW647813.1 EST326267 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI2K6 5', mRNA sequence. 42 0.004 2 BJ243418\|BJ243418.1 Triticum aestivum cDNA clone:whf11b07, 5' end, single read. 54 0.005 1
dna update	2003.11.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CR450777_5(CR450777\|pid:none) Zebrafish DNA sequence from clone ... 309 5e-96 BC083400_1(BC083400\|pid:none) Danio rerio aminomethyltransferase... 308 1e-95 CP000021_704(CP000021\|pid:none) Vibrio fischeri ES114 chromosome... 309 2e-94 (P49364) RecName: Full=Aminomethyltransferase, mitochondrial; ... 309 2e-93 (O23936) RecName: Full=Aminomethyltransferase, mitochondrial; ... 306 2e-93 BT078398_1(BT078398\|pid:none) Lepeophtheirus salmonis Pacific fo... 311 3e-93 (O65396) RecName: Full=Aminomethyltransferase, mitochondrial; ... 307 5e-93 (P93256) RecName: Full=Aminomethyltransferase, mitochondrial; ... 301 5e-93 BA000038_696(BA000038\|pid:none) Vibrio vulnificus YJ016 DNA, chr... 308 1e-92 (P54260) RecName: Full=Aminomethyltransferase, mitochondrial; ... 301 2e-92
protein update	2009. 7.31
PSORT	psg: 0.54 gvh: 0.21 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.03 nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: nuclear 20.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VSF217 is nuc
5' end seq. ID	VSF217F
5' end seq.	>VSF217F.Seq CAAAATATAATTAAAATTATTCAAAAATCCAATAAACGTTATTTTTCATCATCAAATGAA TTAAAAAAAACAGCATTAAATGAATTACATAAAGAATTAGGAGCAAAAATGGTACCATTT TGTGGATGGGAAATGCCGGTTCAATATCCAGCAGGTGTTATGAAAGAACATTTACATGTT AGAAAAGAGAGTGGATTATTTGATGTTTCTCATATGGGACAATTAAGAATTCATGGTAAA GATCGTGTTAAATTCTTTGAGTCAATTGTAGTAGCAGATTTACAAGCATTACCAACTGGA CATTCAAAATTATCAGTATTCACCAATGAGAAAGGTGGTATCATCGATGACACAATGATT ACCAATGCTGGTGATTCATTGTATGTAGTTGTCAATGCAGGTTGTGCAGATAAAGATATT TCACATATTAATGAAAAGATTAAAGAATTCAAATCTGTCAATCCAACACACGATGTAAGT ATGCAATTATTGGAAGATCTCTCATTGATCGCTATCCAAGGTCCAACCACTGAATCAATA TTACAAAAATTCGTAAAAGATCAAGATATTACCAATATGGAATTTATGACACAACGTCCA ATGACAATCGCAGGTATCGATTGCATAG----------
Length of 5' end seq.	628
3' end seq. ID	VSF217Z
3' end seq.	>VSF217Z.Seq NNNNNNNNNNCAGATTTACAAGCATTACCAACTGGACATTCAAAATTATCAGTATTCACC AATGAGAAAGGTGGTATCATCGATGACACAATGATTACCAATGCTGGTGATTCATTGTAT GTAGTTGTCAATGCAGGTTGTGCAGATAAAGATATTTCACATATTAATGAAAAGATTAAA GAATTCAAATCTGTCAATCCAACACACGATGTAAGTATGCAATTATTGGAAGATCTCTCA TTGATCGCTATCCAAGGTCCAACCACTGAATCAATATTACAAAAATTCGTAAAAGATCAA GATATTACCAATATGGAATTTATGACACAACGTCCAATGACAATCGCAGGTATCGATTGC ATAGTGACACGTTGTGGTTACACAGGTGAAGATGGTTTTGAAATTTCCGTACCATCAAAA CAAGCCGTACGATTGGCTGAATTGTTTTTAGCAACTAGTAATGCCTCAATTGAAAGTGGT ATTAAACCAGCTGGTTTAGGTGCTAGAGATTCACTTCGTTTAGAAGCTGGTCTCTGTTTG TATGGTCATGATTTAAATGATGATATCACTCCAATCGAAGCATCACTCAATTGGTTAATT AGTAAACGTCGTAGAGAAGAAGGTGGTTTCCCAGGTGCTTCAATCATTCAAAAACAATTA CAAAAGGATGGTTGTCCACAAAAACGTGTTGGTGTCATCATCAATGGTGCTCCTGCTCGT GAAGGTTGTTTAATCCTCGACCCTTCAACAAACCCAAGAAATCGGTAAAGTCACAAGTGG CACTATCTCCCCAATCACCCGTCAATCAATCTCAATGGCATACGTTAAAACTCCTTTCTC TAAAATCGGTACTCAAGTCAATGTTTCAATTCGTGGTAAACCAATTACTGCCACAATTTC AAAAATGCCGTTTGTCCCAACAAATTATAAAAAATTATAAAAAATTATAAAAAATTATAA AAAAAAAAAAA
Length of 3' end seq.	971
Connected seq. ID	VSF217P
Connected seq.	>VSF217P.Seq CAAAATATAATTAAAATTATTCAAAAATCCAATAAACGTTATTTTTCATCATCAAATGAA TTAAAAAAAACAGCATTAAATGAATTACATAAAGAATTAGGAGCAAAAATGGTACCATTT TGTGGATGGGAAATGCCGGTTCAATATCCAGCAGGTGTTATGAAAGAACATTTACATGTT AGAAAAGAGAGTGGATTATTTGATGTTTCTCATATGGGACAATTAAGAATTCATGGTAAA GATCGTGTTAAATTCTTTGAGTCAATTGTAGTAGCAGATTTACAAGCATTACCAACTGGA CATTCAAAATTATCAGTATTCACCAATGAGAAAGGTGGTATCATCGATGACACAATGATT ACCAATGCTGGTGATTCATTGTATGTAGTTGTCAATGCAGGTTGTGCAGATAAAGATATT TCACATATTAATGAAAAGATTAAAGAATTCAAATCTGTCAATCCAACACACGATGTAAGT ATGCAATTATTGGAAGATCTCTCATTGATCGCTATCCAAGGTCCAACCACTGAATCAATA TTACAAAAATTCGTAAAAGATCAAGATATTACCAATATGGAATTTATGACACAACGTCCA ATGACAATCGCAGGTATCGATTGCATAG----------CAGATTTACAAGCATTACCAAC TGGACATTCAAAATTATCAGTATTCACCAATGAGAAAGGTGGTATCATCGATGACACAAT GATTACCAATGCTGGTGATTCATTGTATGTAGTTGTCAATGCAGGTTGTGCAGATAAAGA TATTTCACATATTAATGAAAAGATTAAAGAATTCAAATCTGTCAATCCAACACACGATGT AAGTATGCAATTATTGGAAGATCTCTCATTGATCGCTATCCAAGGTCCAACCACTGAATC AATATTACAAAAATTCGTAAAAGATCAAGATATTACCAATATGGAATTTATGACACAACG TCCAATGACAATCGCAGGTATCGATTGCATAGTGACACGTTGTGGTTACACAGGTGAAGA TGGTTTTGAAATTTCCGTACCATCAAAACAAGCCGTACGATTGGCTGAATTGTTTTTAGC AACTAGTAATGCCTCAATTGAAAGTGGTATTAAACCAGCTGGTTTAGGTGCTAGAGATTC ACTTCGTTTAGAAGCTGGTCTCTGTTTGTATGGTCATGATTTAAATGATGATATCACTCC AATCGAAGCATCACTCAATTGGTTAATTAGTAAACGTCGTAGAGAAGAAGGTGGTTTCCC AGGTGCTTCAATCATTCAAAAACAATTACAAAAGGATGGTTGTCCACAAAAACGTGTTGG TGTCATCATCAATGGTGCTCCTGCTCGTGAAGGTTGTTTAATCCTCGACCCTTCAACAAA CCCAAGAAATCGGTAAAGTCACAAGTGGCACTATCTCCCCAATCACCCGTCAATCAATCT CAATGGCATACGTTAAAACTCCTTTCTCTAAAATCGGTACTCAAGTCAATGTTTCAATTC GTGGTAAACCAATTACTGCCACAATTTCAAAAATGCCGTTTGTCCCAACAAATTATAAAA AATTATAAAAAATTATAAAAAATTATAAAAAAAAAAAAA
Length of connected seq.	1589
Full length Seq ID	VSF217E
Full length Seq.	>VSF217E.Seq CAAAATATAATTAAAATTATTCAAAAATCCAATAAACGTTATTTTTCATCATCAAATGAA TTAAAAAAAACAGCATTAAATGAATTACATAAAGAATTAGGAGCAAAAATGGTACCATTT TGTGGATGGGAAATGCCGGTTCAATATCCAGCAGGTGTTATGAAAGAACATTTACATGTT AGAAAAGAGAGTGGATTATTTGATGTTTCTCATATGGGACAATTAAGAATTCATGGTAAA GATCGTGTTAAATTCTTTGAGTCAATTGTAGTAGCAGATTTACAAGCATTACCAACTGGA CATTCAAAATTATCAGTATTCACCAATGAGAAAGGTGGTATCATCGATGACACAATGATT ACCAATGCTGGTGATTCATTGTATGTAGTTGTCAATGCAGGTTGTGCAGATAAAGATATT TCACATATTAATGAAAAGATTAAAGAATTCAAATCTGTCAATCCAACACACGATGTAAGT ATGCAATTATTGGAAGATCTCTCATTGATCGCTATCCAAGGTCCAACCACTGAATCAATA TTACAAAAATTCGTAAAAGATCAAGATATTACCAATATGGAATTTATGACACAACGTCCA ATGACAATCGCAGGTATCGATTGCATAGTGACACGTTGTGGTTACACAGGTGAAGATGGT TTTGAAATTTCCGTACCATCAAAACAAGCCGTACGATTGGCTGAATTGTTTTTAGCAACT AGTAATGCCTCAATTGAAAGTGGTATTAAACCAGCTGGTTTAGGTGCTAGAGATTCACTT CGTTTAGAAGCTGGTCTCTGTTTGTATGGTCATGATTTAAATGATGATATCACTCCAATC GAAGCATCACTCAATTGGTTAATTAGTAAACGTCGTAGAGAAGAAGGTGGTTTCCCAGGT GCTTCAATCATTCAAAAACAATTACAAAAGGATGGTTGTCCACAAAAACGTGTTGGTGTC ATCATCAATGGTGCTCCTGCTCGTGAAGGTTGTTTAATCCTCGACCCTTCAACAAACCCA AGAAATCGGTAAAGTCACAAGTGGCACTATCTCCCCAATCACCCGTCAATCAATCTCAAT GGCATACGTTAAAACTCCTTTCTCTAAAATCGGTACTCAAGTCAATGTTTCAATTCGTGG TAAACCAATTACTGCCACAATTTCAAAAATGCCGTTTGTCCCAACAAATTATAAAAAATT ATAAAAAATTATAAAAAATTATAAAAAAAAAAAAA
Length of full length seq.	1235

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas