VSF216
Library VS
(Link to library)
Clone ID VSF216
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05251-1
Original site URL
Representative seq. ID VSF216P
(Link to Original site)
Representative DNA sequence
>VSF216 (VSF216Q) /CSM/VS/VSF2-A/VSF216Q.Seq.d/
CACAATCAAGATCTTCTCAATTTTTTAAAAACAACATATATATTATAATATTAAATAAAA
AATAAATAAAAAAAAATCCAATAATAATGGCATCAAGAGGTAAAACAGAAACTAATAAAT
TAAAAGTTAATATTGAAGAGCAATTAAATAGATTATTAGCACAATTACAAGATATTGAAG
AATTAAAAGAAGATATCACACAAGAAGAATATGATGAAACTAAAAAAGATACACTTGAAC
AAATGAAAGAATTTGAACAATCATTAAAAAAAATGATGTCTGGTGATATGACATTAGTAT
CAGAATTGGGTGGTGTTCAATTAGCAATTCAAGCAGCAGTTTCACAAGCATTCAAAACAC
CAGAAGTTATCAAATTATTTGCAAAGAAAGATCAAAATTCATTAAGAACTAAATTAGGTA
ACATTCAAAGGAGATGTTCAATTAGGTAAAATTTCAAAAGATGCTTATATTGATCAATCT
GTTGAAATTTTAGCTGCTTTAAAGAAATTAGATTTTGTTTTATCACCAGAXXXXXXXXXX
AAATTTANCNNCCTTAAAAAAAATANAATTTGNTTTNTCCCCCNAAAAAANGGNCTTTTT
NAAAAAANNAAAANCC
sequence update 2001. 3.22
Translated Amino Acid sequence
hnqdllnflkttyil*y*iknk*kkiq**whqevkqklin*klilksn*idy*hnykilk
n*kkishkknmmklkkihlnk*knlnnh*kk*clvi*h*yqnwvvfn*qfkqqfhkhskh
qklsnylqrkikih*eln*VTFKGDVQLGKISKDAYIDQSVEILAALKKLDFVLSP---

---KFXXLKKNXIXFXPXKXGLFXKXKX


Translated Amino Acid sequence (All Frames)
Frame A:
hnqdllnflkttyil*y*iknk*kkiq**whqevkqklin*klilksn*idy*hnykilk
n*kkishkknmmklkkihlnk*knlnnh*kk*clvi*h*yqnwvvfn*qfkqqfhkhskh
qklsnylqrkikih*eln*VTFKGDVQLGKISKDAYIDQSVEILAALKKLDFVLSP---

---KFXXLKKNXIXFXPXKXGLFXKXKX

Frame B:
tikifsif*kqhiyynik*kinkkksnnngikr*nrn**iks*y*raik*iistitry*r
ikrryhtrri**n*kryt*tneri*tiikkndvw*ydisirigwcsisnssssftsiqnt
rsyqiickerskfikn*ir*hskemfn*vkfqkmlilinllkf*ll*rn*ilfyhq---

---nlxxlkkixfxxspxkxxfxkkxkx

Frame C:
qsrssqffknniyiiilnkk*ikknpiimasrgktetnklkvnieeqlnrllaqlqdiee
lkeditqeeydetkkdtleqmkefeqslkkmmsgdmtlvselggvqlaiqaavsqafktp
eviklfakkdqnslrtklgniqrrcsir*nfkrcly*sic*nfscfkeirfcfitr---

---ixxp*kkxnlxxppkkxxfxkxxx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF216 (VSF216Q) /CSM/VS/VSF2-A/VSF216Q.Seq.d/ 852 0.0
SSG521 (SSG521Q) /CSM/SS/SSG5-A/SSG521Q.Seq.d/ 831 0.0
VSB141 (VSB141Q) /CSM/VS/VSB1-B/VSB141Q.Seq.d/ 200 2e-50
CFF744 (CFF744Q) /CSM/CF/CFF7-B/CFF744Q.Seq.d/ 40 0.039
AFG829 (AFG829Q) /CSM/AF/AFG8-B/AFG829Q.Seq.d/ 40 0.039
AFD275 (AFD275Q) /CSM/AF/AFD2-D/AFD275Q.Seq.d/ 40 0.039
VSK202 (VSK202Q) /CSM/VS/VSK2-A/VSK202Q.Seq.d/ 38 0.15
VSI111 (VSI111Q) /CSM/VS/VSI1-A/VSI111Q.Seq.d/ 38 0.15
VHL131 (VHL131Q) /CSM/VH/VHL1-B/VHL131Q.Seq.d/ 38 0.15
VHG292 (VHG292Q) /CSM/VH/VHG2-D/VHG292Q.Seq.d/ 38 0.15

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 36 0.011 8
AP000946|AP000946.3 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B335N5, LL56-APP region. 40 0.046 7
AP003131|AP003131.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 3/10. 30 0.079 10
BI501633|BI501633.1 rm03a06.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:O45891 O45891 W06D12.2 PROTEIN. [1] ;, mRNA sequence. 48 0.13 1
AE017004|AE017004.1 Bacillus cereus ATCC 14579 section 7 of 18 of the complete genome. 36 0.24 7
AL137800|AL137800.12 Human DNA sequence from clone RP1-127C7 on chromosome 1q25.1-31.1 Contains the gene for KIAA0250 protein, the NCF2 (neutrophil cytosolic factor 2 (65kD,chronic granulomatous disease, autosomal 2) gene, the 3' end of the gene for ARPC5 (actin related protein 2/3 complex, subunit 5 (16 kD)), ESTs, STSs, GSSs and a CpG island. 44 0.30 3
AP003187|AP003187.2 Clostridium perfringens DNA, complete genome, section 3/10. 44 0.33 6
BM169711|BM169711.1 EST572234 PyBS Plasmodium yoelii yoelii cDNA clone PYCPV43 5' end, mRNA sequence. 42 0.40 2
AC141113|AC141113.5 Medicago truncatula clone mth2-7h7, complete sequence. 36 0.45 6
AZ669893|AZ669893.1 ENTFX06TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 0.51 1
dna update 2003. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54ID4) RecName: Full=Protein LZIC; AltName: Full=Leucine zippe... 220 1e-68
DQ058007_1(DQ058007|pid:none) Danio rerio leucine zipper and ICA... 165 7e-44
BT079000_1(BT079000|pid:none) Esox lucius clone eluc-evq-514-298... 164 9e-44
(Q6DHH7) RecName: Full=Protein LZIC; AltName: Full=Leucine zippe... 164 1e-43
BT046259_1(BT046259|pid:none) Salmo salar clone ssal-eve-569-130... 162 2e-42
AK304348_1(AK304348|pid:none) Homo sapiens cDNA FLJ55829 complet... 161 4e-42
CS300634_1(CS300634|pid:none) Sequence 142 from Patent EP1661986. 161 4e-42
(Q8WZA0) RecName: Full=Protein LZIC; AltName: Full=Leucine zippe... 161 4e-42
(Q5PQN7) RecName: Full=Protein LZIC; AltName: Full=Leucine zippe... 160 2e-41
(Q8K3C3) RecName: Full=Protein LZIC; AltName: Full=Leucine zippe... 161 3e-41
protein update 2009. 7.31
PSORT

psg: 0.55 gvh: 0.45 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial

>> prediction for VSF216 is cyt

5' end seq. ID VSF216F
5' end seq.
>VSF216F.Seq
CACAATCAAGATCTTCTCAATTTTTTAAAAACAACATATATATTATAATATTAAATAAAA
AATAAATAAAAAAAAATCCAATAATAATGGCATCAAGAGGTAAAACAGAAACTAATAAAT
TAAAAGTTAATATTGAAGAGCAATTAAATAGATTATTAGCACAATTACAAGATATTGAAG
AATTAAAAGAAGATATCACACAAGAAGAATATGATGAAACTAAAAAAGATACACTTGAAC
AAATGAAAGAATTTGAACAATCATTAAAAAAAATGATGTCTGGTGATATGACATTAGTAT
CAGAATTGGGTGGTGTTCAATTAGCAATTCAAGCAGCAGTTTCACAAGCATTCAAAACAC
CAGAAGTTATCAAATTATTTGCAAAGAAAGATCAAAATTCATTAAGAACTAAATTAGGTA
ACATTCAAAGGAGATGTTCAATTAGGTAAAATTTCAAAAGATGCTTATATTGATCAATCT
GTTGAAATTTTAGCTGCTTTAAAGAAATTAGATTTTGTTTTATCACCAGA----------
Length of 5' end seq. 530
3' end seq. ID VSF216Z
3' end seq.
>VSF216Z.Seq
----------AAATTTANCNNCCTTAAAAAAAATANAATTTGNTTTNTCCCCCNAAAAAA
NGGNCTTTTTNAAAAAANNAAAANCC
Length of 3' end seq. 76
Connected seq. ID VSF216P
Connected seq.
>VSF216P.Seq
CACAATCAAGATCTTCTCAATTTTTTAAAAACAACATATATATTATAATATTAAATAAAA
AATAAATAAAAAAAAATCCAATAATAATGGCATCAAGAGGTAAAACAGAAACTAATAAAT
TAAAAGTTAATATTGAAGAGCAATTAAATAGATTATTAGCACAATTACAAGATATTGAAG
AATTAAAAGAAGATATCACACAAGAAGAATATGATGAAACTAAAAAAGATACACTTGAAC
AAATGAAAGAATTTGAACAATCATTAAAAAAAATGATGTCTGGTGATATGACATTAGTAT
CAGAATTGGGTGGTGTTCAATTAGCAATTCAAGCAGCAGTTTCACAAGCATTCAAAACAC
CAGAAGTTATCAAATTATTTGCAAAGAAAGATCAAAATTCATTAAGAACTAAATTAGGTA
ACATTCAAAGGAGATGTTCAATTAGGTAAAATTTCAAAAGATGCTTATATTGATCAATCT
GTTGAAATTTTAGCTGCTTTAAAGAAATTAGATTTTGTTTTATCACCAGA----------
AAATTTANCNNCCTTAAAAAAAATANAATTTGNTTTNTCCCCCNAAAAAANGGNCTTTTT
NAAAAAANNAAAANCC
Length of connected seq. 606
Full length Seq ID -
Full length Seq. -
Length of full length seq. -