VSF193
Library VS
(Link to library)
Clone ID VSF193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15128-1
Original site URL
Representative seq. ID VSF193P
(Link to Original site)
Representative DNA sequence
>VSF193 (VSF193Q) /CSM/VS/VSF1-D/VSF193Q.Seq.d/
CCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATC
CCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATT
GCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGA
GATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGAT
GTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTT
GACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGATTGTTGA
TTATATAAAAAAAAAAXXXXXXXXXXCCAAGACTTACCAATGACTTCGACACTAACAAGA
GAACTTGCGACAAACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTT
TCTGTACCCATTTAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAAT
TACAAGAAGAAGAAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAA
CCAACGAAGTTAAAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCC
CAACCATCCCACAAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAAT
CAAACAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
qdlpmtstltrelatnsprshqnv*etrllvsvpi**DVLLMVQSVVFLTNYKKKKEKRE
ITTFHKNQPSKPTKLKSIVMLKKCLNLLWNSQPSHKSTSLTKRDTTKTPKNQTNKRQIVD
YIKKK---

---PRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRRIANGPVRGISYKLQEEER
EKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIPQIHVVDQKRYNKNTKKSNK


Translated Amino Acid sequence (All Frames)
Frame A:
prltndfdtnkrtcdklakipskrlrnkiagfcthlmrriangpvrgisyklqeeerekr
dnyvpqesaiktnevkidrdveemlkstlefptipqihvvdqkrynkntkksnk*tsdc*
lykkk---

---PRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRRIANGPVRGISYKLQEEER
EKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIPQIHVVDQKRYNKNTKKSNK

Frame B:
qdlpmtstltrelatnsprshqnv*etrllvsvpi**DVLLMVQSVVFLTNYKKKKEKRE
ITTFHKNQPSKPTKLKSIVMLKKCLNLLWNSQPSHKSTSLTKRDTTKTPKNQTNKRQIVD
YIKKK---

---qdlpmtstltrelatnsprshqnv*etrllvsvpi**dvllmvqsvvfltnykkkke
kreittfhknqpskptklksivmlkkclnllwnsqpshkstsltkrdttktpknqtn

Frame C:
ktyq*lrh*qenlrqtrqdpiktfkkqdcwflypfnetyc*wsspwyflqitrrrkrker
*lrstrishqnqrs*nrs*c*rna*iyfgipnhptnprr*pkeiqqkhqkikqinvrlli
i*kk---

---ktyq*lrh*qenlrqtrqdpiktfkkqdcwflypfnetyc*wsspwyflqitrrrkr
ker*lrstrishqnqrs*nrs*c*rna*iyfgipnhptnprr*pkeiqqkhqkikq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ410 (VSJ410Q) /CSM/VS/VSJ4-A/VSJ410Q.Seq.d/ 311 8e-84
VSI879 (VSI879Q) /CSM/VS/VSI8-D/VSI879Q.Seq.d/ 311 8e-84
VSI470 (VSI470Q) /CSM/VS/VSI4-C/VSI470Q.Seq.d/ 311 8e-84
VSI273 (VSI273Q) /CSM/VS/VSI2-D/VSI273Q.Seq.d/ 311 8e-84
VSI191 (VSI191Q) /CSM/VS/VSI1-D/VSI191Q.Seq.d/ 311 8e-84
VSH760 (VSH760Q) /CSM/VS/VSH7-C/VSH760Q.Seq.d/ 311 8e-84
VSH591 (VSH591Q) /CSM/VS/VSH5-D/VSH591Q.Seq.d/ 311 8e-84
VSH427 (VSH427Q) /CSM/VS/VSH4-B/VSH427Q.Seq.d/ 311 8e-84
VSG546 (VSG546Q) /CSM/VS/VSG5-B/VSG546Q.Seq.d/ 311 8e-84
VSG345 (VSG345Q) /CSM/VS/VSG3-B/VSG345Q.Seq.d/ 311 8e-84

own update 2001.11.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L35173|L35173.1 Dictyostelium discoideum ribosomal protein (rps17) gene, complete cds. 311 e-144 4
BG259081|BG259081.1 602379133F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:4509608 5', mRNA sequence. 50 0.039 1
BQ434132|BQ434132.1 AGENCOURT_7808782 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:6069301 5', mRNA sequence. 50 0.039 1
H36865|H36865.1 14994 Lambda-PRL2 Arabidopsis thaliana cDNA clone 180B22T7, mRNA sequence. 36 0.47 2
BH850006|BH850006.1 SALK_070663.52.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_070663.52.00.x, DNA sequence. 34 0.52 2
CD476733|CD476733.1 eca01-28ms1-f11 Eca01 Eschscholzia californica cDNA clone eca01-28ms1-f11 5', mRNA sequence. 46 0.61 1
BH613650|BH613650.1 SALK_034622 Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_034622, DNA sequence. 34 0.78 2
BT000851|BT000851.1 Arabidopsis thaliana At5g04800/MUK11_12 mRNA, complete cds. 34 1.4 2
U74165|U74165.1 ATU74165 NaCl-treated Arabidopsis subtraction library Arabidopsis thaliana cDNA clone OS0132, mRNA sequence. 34 1.5 2
AV544633|AV544633.1 Arabidopsis thaliana cDNA clone:RZ51g10F, 3' end. 34 1.7 2
dna update 2003. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU124942_1(EU124942|pid:none) Arenicola marina ribosomal protein... 129 1e-28
EU247177_1(EU247177|pid:none) Lycosa singoriensis clone LSsin973... 125 1e-27
CP000584_487(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 124 2e-27
AY857475_1(AY857475|pid:none) Suberites domuncula S17 mRNA, comp... 124 2e-27
AF548334_1(AF548334|pid:none) Branchiostoma belcheri ribosomal p... 124 3e-27
(A5PK63) RecName: Full=40S ribosomal protein S17; &BC142374_1(B... 123 5e-27
BC091562_1(BC091562|pid:none) Danio rerio zgc:114188, mRNA (cDNA... 123 5e-27
S00760(S00760) ribosomal protein S17, cytosolic - chicken (fragm... 123 7e-27
AY892179_1(AY892179|pid:none) Synthetic construct Homo sapiens c... 123 7e-27
BT058153_1(BT058153|pid:none) Salmo salar clone Contig981 40S ri... 123 7e-27
protein update 2009. 7.31
PSORT

psg: 0.75 gvh: 0.44 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.33 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for VSF193 is cyt

5' end seq. ID VSF193F
5' end seq.
>VSF193F.Seq
CCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATC
CCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATT
GCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGA
GATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGAT
GTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTT
GACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGATTGTTGA
TTATATAAAAAAAAAA----------
Length of 5' end seq. 376
3' end seq. ID VSF193Z
3' end seq.
>VSF193Z.Seq
----------CCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACT
CGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAAT
GAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAG
AGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAAT
CGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCACAAAT
CCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAAT
Length of 3' end seq. 343
Connected seq. ID VSF193P
Connected seq.
>VSF193P.Seq
CCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTTGCGACAAACTCGCCAAGATC
CCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTACCCATTTAATGAGACGTATT
GCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAGAAGAAGAAAGAGAAAAGAGA
GATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACGAAGTTAAAATCGATCGTGAT
GTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCATCCCACAAATCCACGTCGTT
GACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGATTGTTGA
TTATATAAAAAAAAAA----------CCAAGACTTACCAATGACTTCGACACTAACAAGA
GAACTTGCGACAAACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTT
TCTGTACCCATTTAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAAT
TACAAGAAGAAGAAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAA
CCAACGAAGTTAAAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCC
CAACCATCCCACAAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAAT
CAAACAAAT
Length of connected seq. 719
Full length Seq ID -
Full length Seq. -
Length of full length seq. -