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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF173
Library VS
(Link to library)
Clone ID VSF173
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04342-1
Original site URL
Representative seq. ID VSF173Z
(Link to Original site)
Representative DNA sequence 
>VSF173 (VSF173Q) /CSM/VS/VSF1-D/VSF173Q.Seq.d/
XXXXXXXXXXCATAAACATCAAAAAAATGGGACATGATATTAAAGCAATTATAGGTTTTT
CTTGCGCATTTGCAGTTGGTTTATTATTTAATATTTTAGCATGTATAGTTTCTCACTCTG
GTTATCCAATTATAGTTGTTGCATCATATTTTCTTGCTCCCGTTCCCAAATATATTATGT
AGAAATAGAGATAGTTTTTCAAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTA
ACAGGTCTATTTATNACATCTGGATTTGCAATTCCNATGATTTTAGCCCATTCAGATATT
ATTTCAGGAAAAGCACTTGCATTTTCA
sequence update 2001. 3.22
Translated Amino Acid sequence 
---*tskkwdmilkql*vflahlqlvyylif*hv*fltlviql*LLHHIFLLPFPNILCR
NRDSFSSEKGTFEDIGLFLTGLFXTSGFAIPMILAHSDIISGKALAFS
Translated Amino Acid sequence (All Frames) 
Frame A:
---inikkmghdikaiigfscafavgllfnilacivshsgypiivvasyflapvpkyim*
k*r*ffk*krni*rywvifnrsiyxiwicnsxdfspfryyfrkstcif


Frame B:
---*tskkwdmilkql*vflahlqlvyylif*hv*fltlviql*LLHHIFLLPFPNILCR
NRDSFSSEKGTFEDIGLFLTGLFXTSGFAIPMILAHSDIISGKALAFS


Frame C:
---khqkngt*y*snyrfflricswfii*yfsmysfslwlsnyscciifscsrsqiyyve
ieivfqvkkehlkilgyf*qvylxhldlqfx*f*piqilfqekhlhf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF173 (VSF173Q) /CSM/VS/VSF1-D/VSF173Q.Seq.d/                        583   e-166
SSK203 (SSK203Q) /CSM/SS/SSK2-A/SSK203Q.Seq.d/                        567   e-161
SSA242 (SSA242Q) /CSM/SS/SSA2-B/SSA242Q.Seq.d/                        567   e-161
SSD585 (SSD585Q) /CSM/SS/SSD5-D/SSD585Q.Seq.d/                        559   e-159
SSA421 (SSA421Q) /CSM/SS/SSA4-A/SSA421Q.Seq.d/                        559   e-159
SSB817 (SSB817Q) /CSM/SS/SSB8-A/SSB817Q.Seq.d/                        218   4e-56
SHL471 (SHL471Q) /CSM/SH/SHL4-C/SHL471Q.Seq.d/                        113   2e-24
SHL518 (SHL518Q) /CSM/SH/SHL5-A/SHL518Q.Seq.d/                         36   0.31
CHG432 (CHG432Q) /CSM/CH/CHG4-B/CHG432Q.Seq.d/                         36   0.31
AHI352 (AHI352Q) /CSM/AH/AHI3-C/AHI352Q.Seq.d/                         36   0.31
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI413826|BI413826.1 602991863F1 NCI_CGAP_Lu33 Mus musculus cDNA clone IMAGE:5147726 5', mRNA sequence.    52  0.004  1
AL133478|AL133478.12 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-18O16.    46  0.26  1
AX144639|AX144639.1 Sequence 3361 from Patent WO0134809.          36  0.42  3
AF269319|AF269319.1 Staphylococcus epidermidis strain SR1 clone step.1002a02 genomic sequence.    36  0.42  3
AC099116|AC099116.5 Rattus norvegicus clone CH230-170L23, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.0  1
AC097743|AC097743.7 Rattus norvegicus clone CH230-18D18, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.0  1
AC106211|AC106211.5 Rattus norvegicus clone CH230-42G9, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.0  1
BX153312|BX153312.1 Danio rerio genomic clone DKEY-114E16, genomic survey sequence.    34  1.1  3
AC016003|AC016003.3 Homo sapiens clone RP11-23I9, WORKING DRAFT SEQUENCE, 30 unordered pieces.    46  1.4  2
AC017003|AC017003.4 Homo sapiens clone RP11-78C11, complete sequence.    38  1.5  4
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294020_35(BX294020|pid:none) Neurospora crassa DNA linkage gro...    49   1e-10
CU640366_582(CU640366|pid:none) Podospora anserina genomic DNA c...    45   2e-10
AP007164_57(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ...    43   2e-09
AM920435_1159(AM920435|pid:none) Penicillium chrysogenum Wiscons...    43   2e-09
AM270330_34(AM270330|pid:none) Aspergillus niger contig An15c003...    42   3e-09
CR382132_95(CR382132|pid:none) Yarrowia lipolytica strain CLIB12...    45   8e-09
CU928170_293(CU928170|pid:none) Kluyveromyces thermotolerans str...    42   1e-07
CU928178_205(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    40   1e-07
CR382125_971(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    41   2e-07
AE017349_162(AE017349|pid:none) Cryptococcus neoformans var. neo...    41   5e-07
protein update 2009. 7.31
PSORT 

 psg: 0.89  gvh: 0.71  alm: 0.43  top: 0.33  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for VSF173 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSF173Z
3' end seq. 
>VSF173Z.Seq
----------CATAAACATCAAAAAAATGGGACATGATATTAAAGCAATTATAGGTTTTT
CTTGCGCATTTGCAGTTGGTTTATTATTTAATATTTTAGCATGTATAGTTTCTCACTCTG
GTTATCCAATTATAGTTGTTGCATCATATTTTCTTGCTCCCGTTCCCAAATATATTATGT
AGAAATAGAGATAGTTTTTCAAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTA
ACAGGTCTATTTATNACATCTGGATTTGCAATTCCNATGATTTTAGCCCATTCAGATATT
ATTTCAGGAAAAGCACTTGCATTTTCA
Length of 3' end seq. 317
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -