>VSF171 (VSF171Q) /CSM/VS/VSF1-C/VSF171Q.Seq.d/
AGAAAATATGGCTAGAGAATTATGGTTAACTCACCCAAGAAACTTCGGTCCAGGTTCCCG
TACCTGTCGTAAATGTGGCAACCATCACGGTATCATCAGAAAATACGACTTAAACATGTG
CAGACGTTGTTTCCGTACCGACGCTGAAGCCATCGGTTTCAACAAATACCGTTAAGCTCT
ATATAATTATTTTTTATTTAAATAAAAAGAAACGATTAGAAAAGCAATTTAGAAAAAAAA
AAXXXXXXXXXXAGAAAATATGGCTAGAGAATTATGGTTAACTCACCCAAGAAACTTCGG
TCCAGGTTCCCGTACCTGTCGTAAATGTGGCAACCATCACGGTATCATCAGAAAATACGA
CTTAAACATGTGCAGACGTTGTTTCCGTACCGACGCTGAAGCCATCGGTTTCAACAAATA
CCGTTAAGCTCTATATAATTNTTTTTATTTAAATAAAAAGAAACGNNTAGAAAAGCA

kiwlenyg*ltqetsvqvpvpvvnvatitvssentt*TCADVVSVPTLKPSVSTNTVKLY
IIIFYLNKKKRLEKQFRKKK---

---ENMARELWLTHPRNFGPGSRTCRKCGNHHGIIRKYDLNMCRRCFRTDAEAIGFNKYR
*alynxfylnkkkrxek

Frame A:
rkyg*rimvnspkklrsrfpyls*mwqpsryhqkirlkhvqtlfpyrr*shrfqqiplss
i*lffi*ikrnd*ksnlekk---

---rkyg*rimvnspkklrsrfpyls*mwqpsryhqkirlkhvqtlfpyrr*shrfqqip
lssi*xflfk*ketxrka

Frame B:
enmarelwlthprnfgpgsrtcrkcgnhhgiirkydlnmcrrcfrtdaeaigfnkyr*al
ynyflfk*ketirkai*kkk---

---ENMARELWLTHPRNFGPGSRTCRKCGNHHGIIRKYDLNMCRRCFRTDAEAIGFNKYR
*alynxfylnkkkrxek

Frame C:
kiwlenyg*ltqetsvqvpvpvvnvatitvssentt*TCADVVSVPTLKPSVSTNTVKLY
IIIFYLNKKKRLEKQFRKKK---

---kiwlenyg*ltqetsvqvpvpvvnvatitvssentt*tcadvvsvptlkpsvstntv
klyiixfi*ikrnx*ks

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ353 (VSJ353Q) /CSM/VS/VSJ3-C/VSJ353Q.Seq.d/                        460   e-129
VSJ326 (VSJ326Q) /CSM/VS/VSJ3-B/VSJ326Q.Seq.d/                        460   e-129
VSH138 (VSH138Q) /CSM/VS/VSH1-B/VSH138Q.Seq.d/                        460   e-129
VSF621 (VSF621Q) /CSM/VS/VSF6-A/VSF621Q.Seq.d/                        460   e-129
VSF359 (VSF359Q) /CSM/VS/VSF3-C/VSF359Q.Seq.d/                        460   e-129
VSF171 (VSF171Q) /CSM/VS/VSF1-C/VSF171Q.Seq.d/                        460   e-129
VSD705 (VSD705Q) /CSM/VS/VSD7-A/VSD705Q.Seq.d/                        460   e-129
VSB537 (VSB537Q) /CSM/VS/VSB5-B/VSB537Q.Seq.d/                        460   e-129
VSA708 (VSA708Q) /CSM/VS/VSA7-A/VSA708Q.Seq.d/                        460   e-129
VSA675 (VSA675Q) /CSM/VS/VSA6-D/VSA675Q.Seq.d/                        460   e-129

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.   329  e-110  4
BE104878|BE104878.1 UI-R-BX0-aru-g-07-0-UI.s1 UI-R-BX0 Rattus norvegicus cDNA clone UI-R-BX0-aru-g-07-0-UI 3', mRNA sequence.    46  0.003  2
BM095006|BM095006.1 saj25a01.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-3482 5', mRNA sequence.    48  0.099  1
BM901446|BM901446.1 rc28h07.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to contains element MER37 repetitive element ;, mRNA sequence.    36  0.19  2
BM901300|BM901300.1 rc27d03.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to contains element MER37 repetitive element ;, mRNA sequence.    36  0.20  2
CC794352|CC794352.1 SALK_047932.53.75.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_047932.53.75.x, genomic survey sequence.    46  0.39  1
AC132428|AC132428.1 Mus musculus chromosome UNK clone RP23-203K20, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46  0.39  1
AX711917|AX711917.1 Sequence 9 from Patent WO02097085.            46  0.39  1
AX346851|AX346851.1 Sequence 1922 from Patent WO0200928.          46  0.39  1
BZ386476|BZ386476.1 EINBD42TF EI_10_12_KB Entamoeba invadens genomic clone EINBD42, DNA sequence.    46  0.39  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF144929_1(EF144929|pid:none) Populus trichocarpa clone WS01119_...    86   4e-16
(Q6BY86) RecName: Full=40S ribosomal protein S29;  &CR382133_483...    86   5e-16
CP000497_605(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    85   7e-16
(Q6FWE3) RecName: Full=40S ribosomal protein S29;  &CR380950_32(...    84   1e-15
EU726792_1(EU726792|pid:none) Caenorhabditis brenneri clone 8D6....    84   2e-15
T25449(T25449)hypothetical protein B0412.4 - Caenorhabditis eleg...    84   2e-15
FM992695_748(FM992695|pid:none) Candida dubliniensis CD36 chromo...    83   3e-15
AY264807_1(AY264807|pid:none) Branchiostoma belcheri tsingtaunes...    83   4e-15
AK175731_1(AK175731|pid:none) Arabidopsis thaliana mRNA for ribo...    83   4e-15
AC092781_13(AC092781|pid:none) Oryza sativa chromosome 3 BAC OSJ...    82   5e-15

 psg: 0.75  gvh: 0.46  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.07
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSF171 is cyt

>VSF171F.Seq
AGAAAATATGGCTAGAGAATTATGGTTAACTCACCCAAGAAACTTCGGTCCAGGTTCCCG
TACCTGTCGTAAATGTGGCAACCATCACGGTATCATCAGAAAATACGACTTAAACATGTG
CAGACGTTGTTTCCGTACCGACGCTGAAGCCATCGGTTTCAACAAATACCGTTAAGCTCT
ATATAATTATTTTTTATTTAAATAAAAAGAAACGATTAGAAAAGCAATTTAGAAAAAAAA
AA----------

>VSF171Z.Seq
----------AGAAAATATGGCTAGAGAATTATGGTTAACTCACCCAAGAAACTTCGGTC
CAGGTTCCCGTACCTGTCGTAAATGTGGCAACCATCACGGTATCATCAGAAAATACGACT
TAAACATGTGCAGACGTTGTTTCCGTACCGACGCTGAAGCCATCGGTTTCAACAAATACC
GTTAAGCTCTATATAATTNTTTTTATTTAAATAAAAAGAAACGNNTAGAAAAGCA

>VSF171P.Seq
AGAAAATATGGCTAGAGAATTATGGTTAACTCACCCAAGAAACTTCGGTCCAGGTTCCCG
TACCTGTCGTAAATGTGGCAACCATCACGGTATCATCAGAAAATACGACTTAAACATGTG
CAGACGTTGTTTCCGTACCGACGCTGAAGCCATCGGTTTCAACAAATACCGTTAAGCTCT
ATATAATTATTTTTTATTTAAATAAAAAGAAACGATTAGAAAAGCAATTTAGAAAAAAAA
AA----------AGAAAATATGGCTAGAGAATTATGGTTAACTCACCCAAGAAACTTCGG
TCCAGGTTCCCGTACCTGTCGTAAATGTGGCAACCATCACGGTATCATCAGAAAATACGA
CTTAAACATGTGCAGACGTTGTTTCCGTACCGACGCTGAAGCCATCGGTTTCAACAAATA
CCGTTAAGCTCTATATAATTNTTTTTATTTAAATAAAAAGAAACGNNTAGAAAAGCA