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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF169
Library VS
(Link to library)
Clone ID VSF169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSF169F
(Link to Original site)
Representative DNA sequence 
>VSF169 (VSF169Q) /CSM/VS/VSF1-C/VSF169Q.Seq.d/
TGTTGAATTCATCCTCACTGAAGTTGAAAAAGCTGTCCCAAAACCAGCTGAAGAATCCGC
CCAAAAGAAGAAATCXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
VEFILTEVEKAVPKPAEESAQKKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
c*ihph*s*kscpkts*rirpkee---


Frame B:
VEFILTEVEKAVPKPAEESAQKKK---


Frame C:
lnssslklkklsqnqlknppkrrn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ734 (VSJ734Q) /CSM/VS/VSJ7-B/VSJ734Q.Seq.d/                        149   7e-36
VSJ325 (VSJ325Q) /CSM/VS/VSJ3-B/VSJ325Q.Seq.d/                        149   7e-36
VSH352 (VSH352Q) /CSM/VS/VSH3-C/VSH352Q.Seq.d/                        149   7e-36
VSH245 (VSH245Q) /CSM/VS/VSH2-B/VSH245Q.Seq.d/                        149   7e-36
VSG433 (VSG433Q) /CSM/VS/VSG4-B/VSG433Q.Seq.d/                        149   7e-36
VSF481 (VSF481Q) /CSM/VS/VSF4-D/VSF481Q.Seq.d/                        149   7e-36
VSF310 (VSF310Q) /CSM/VS/VSF3-A/VSF310Q.Seq.d/                        149   7e-36
VSF169 (VSF169Q) /CSM/VS/VSF1-C/VSF169Q.Seq.d/                        149   7e-36
VSE787 (VSE787Q) /CSM/VS/VSE7-D/VSE787Q.Seq.d/                        149   7e-36
VSE411 (VSE411Q) /CSM/VS/VSE4-A/VSE411Q.Seq.d/                        149   7e-36
own update 2001.11.21
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC011126|AC011126.3 Homo sapiens chromosome 15 clone RP11-103L2 map 15, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36  3.1  3
BY092592|BY092592.1 Mus musculus cDNA, RIKEN full-length enriched library, clone:K630092G13, 5' end partial sequence.    40  3.4  1
BJ175620|BJ175620.1 Physcomitrella patens subsp. patens cDNA clone:pphb15g10, 5' end, single read.    40  3.4  1
BJ173918|BJ173918.1 Physcomitrella patens subsp. patens cDNA clone:pphb10i02, 5' end, single read.    40  3.4  1
AC090544|AC090544.2 Homo sapiens chromosome 15 clone RP11-11B2 map 15, LOW-PASS SEQUENCE SAMPLING.    40  3.4  1
AC067808|AC067808.1 Homo sapiens chromosome 11 clone RP11-107D21 map 11, LOW-PASS SEQUENCE SAMPLING.    40  3.4  1
BJ187354|BJ187354.1 Physcomitrella patens subsp. patens cDNA clone:pphb40f16, 5' end, single read.    40  3.4  1
AC095627|AC095627.7 Rattus norvegicus clone CH230-8N23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38     13  1
AC079142|AC079142.15 Homo sapiens Xp BAC RP11-657D19 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38     13  1
BM896951|BM896951.1 ph50b12.y1 Ostertagia ostertagi L4 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to TR:Q9U602 Q9U602 PUTATIVE NUCLEOSOME BINDING PROTEIN. ;, mRNA sequence.    38     13  1
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P18621) RecName: Full=60S ribosomal protein L17; AltName: Full=...    37   0.28
BC077192_1(BC077192|pid:none) Xenopus laevis MGC78885 protein, m...    37   0.28
(P24049) RecName: Full=60S ribosomal protein L17; AltName: Full=...    37   0.28
BC094640_1(BC094640|pid:none) Mus musculus ribosomal protein L17...    37   0.28
BC043971_1(BC043971|pid:none) Xenopus laevis similar to ribosoma...    37   0.28
AB173559_1(AB173559|pid:none) Macaca fascicularis brain cDNA clo...    37   0.28
AY246726_1(AY246726|pid:none) Equus caballus ribosomal protein L...    37   0.28
AB172151_1(AB172151|pid:none) Macaca fascicularis brain cDNA clo...    37   0.28
AB098987_1(AB098987|pid:none) Bos taurus mRNA for similar to rib...    37   0.28
AY650298_1(AY650298|pid:none) Macaca fascicularis ribosomal prot...    37   0.28
protein update 2009. 3.22
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSF169 is nuc
5' end seq. ID VSF169F
5' end seq. 
>VSF169F.Seq
TGTTGAATTCATCCTCACTGAAGTTGAAAAAGCTGTCCCAAAACCAGCTGAAGAATCCGC
CCAAAAGAAGAAATC----------
Length of 5' end seq. 75
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -