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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF165
Library VS
(Link to library)
Clone ID VSF165
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14919-1
Original site URL
Representative seq. ID VSF165P
(Link to Original site)
Representative DNA sequence 
>VSF165 (VSF165Q) /CSM/VS/VSF1-C/VSF165Q.Seq.d/
TAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATCAAGAGCAGTTAT
GGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCCAGGTTCAAGATA
TTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAAGAGAGCATTTAC
TCTCATCCAACGGGAATGCTTTTAATGCTCTCTTTTGACAAAGAGAGCATGANAAGCATT
CCGTNNGGATGAGAGTNANTGCNCNGXXXXXXXXXXGAAGAGTACGACATTGAATCAAAG
ATCAATTTCGCAGTTTTCCCATCACTCCAAGGTGGTCCACATGAAAATGTTATTGCTGGT
GTTGCTGTTGCTCTCAAAGAAGCCGACTCTCAAGAATTCAAAGAGTATGCCCTTCAAGTT
AAAAAGAATGCCGCTGCCATTGGTAATGCTCTCATGAACAAAGGTTATAAATTGGTTACA
AATGGTACTGACAATCATTTAATTCTTTGGGATTTAAGACCAAAGGAACTCACTGGTAAT
AAATTTGAAAAAGCTGCCGATATCGCTAATATCACCGTCAATAAAAATGCCGTCCATGGT
GATACCAATGCAATTTCACCAGGTGGTATTCGTATTGGTTCATCTGCTCTCACAAGTAGA
GGTTTAAAGGAAGCCGATTTTGAAAAGATTGCTGATTTCCTTGATAGAATCGTTTCAATC
TCTCTTGAAATTCAAGGTCGTGTCGGTAAGAAATTGGTTGATTTTGTTGTTGAAATTAAT
AAATCAAAAGAATTATTAGATTTACGTAAAGAAGTTGAAGAATTNTCTTCAAAATTCACT
TTACCAGGTATTTAAATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
dnlkv*n*lplkilhqeqlwkh*dhilqinmqkviqvqdimvvqkllmn*klfvkrehll
ssngnafnalf*QREHXKHSVXMRVXAX---

---EEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGN
ALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGG
IRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLR
KEVEEXSSKFTLPGI*i
Translated Amino Acid sequence (All Frames) 
Frame A:
*ti*rfrincl*kfyikssygsiritfyk*icrrlsrfkilwwyrsc**irnslskesiy
shptgmllmlsfdkesmxsipxg*exxx---

---EEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGN
ALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGG
IRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLR
KEVEEXSSKFTLPGI*i

Frame B:
rqfkgleliasenftsravmealgshftnkyaegypgsryyggtevvdeletlcqkraft
liqrecf*cslltkra*xafrxdesxcx---

---ksttlnqrsisqfshhskvvhmkmlllvllllskkptlknsksmpfklkrmplplvm
ls*tkvinwlqmvltii*ffgi*dqrnslvinlkklpislispsikmpsmvipmqfhqvv
fvlvhllsqvev*rkpilkrllisliesfqsllkfkvvsvrnwlilllklinqkny*iyv
kklknxlqnslyqvfk

Frame C:
dnlkv*n*lplkilhqeqlwkh*dhilqinmqkviqvqdimvvqkllmn*klfvkrehll
ssngnafnalf*QREHXKHSVXMRVXAX---

---rvrh*ikdqfrsfpitprwst*kcycwccccsqrsrlsriqrvcpss*kecrchw*c
sheqrl*igykwy*qsfnslgfktkgthw**i*kscryr*yhrq*kcrpw*yqcnftrwy
sywficshk*rfkgsrf*kdc*fp**nrfnls*nsrscr*eig*fcc*n**ikriirft*
rs*rixfkihftryln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF165 (VSF165Q) /CSM/VS/VSF1-C/VSF165Q.Seq.d/                       1594   0.0
VHA876 (VHA876Q) /CSM/VH/VHA8-D/VHA876Q.Seq.d/                       1148   0.0
VFM764 (VFM764Q) /CSM/VF/VFM7-C/VFM764Q.Seq.d/                       1148   0.0
VFG867 (VFG867Q) /CSM/VF/VFG8-C/VFG867Q.Seq.d/                       1148   0.0
VFF732 (VFF732Q) /CSM/VF/VFF7-B/VFF732Q.Seq.d/                       1148   0.0
VFC539 (VFC539Q) /CSM/VF/VFC5-B/VFC539Q.Seq.d/                       1148   0.0
SSA106 (SSA106Q) /CSM/SS/SSA1-A/SSA106Q.Seq.d/                       1148   0.0
SFI573 (SFI573Q) /CSM/SF/SFI5-D/SFI573Q.Seq.d/                       1148   0.0
SFD348 (SFD348Q) /CSM/SF/SFD3-B/SFD348Q.Seq.d/                       1148   0.0
SFB690 (SFB690Q) /CSM/SF/SFB6-D/SFB690Q.Seq.d/                       1148   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ091175|BQ091175.1 ku13g11.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:GLYC_CAEEL P50432 SERINE HYDROXYMETHYLTRANSFERASE ;, mRNA sequence.    56  1e-11  3
AR346796|AR346796.1 Sequence 1407 from patent US 6583275.         48  7e-06  3
X53816|X53816.1 Campylobacter jejuni glyA gene for serine hydroxymethyltransferase  (EC 2.1.2.1).    62  1e-05  1
BI418085|BI418085.1 LjNEST24d6r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.    60  5e-05  1
AF009966|AF009966.1 Candida albicans serine hydroxymethyl transferase II (SHMII) gene, complete cds.    44  7e-05  3
AL408772|AL408772.1 T7 end of clone AV0AA010F02 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    58  2e-04  1
CA823571|CA823571.1 R28C11 two-month-old roots from clone 'Beaupre' Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence.    42  3e-04  2
BH532746|BH532746.1 BOHHD28TF BOHH Brassica oleracea genomic clone BOHHD28, DNA sequence.    42  7e-04  3
D40018|D40018.1 Rice cDNA, partial sequence (S1736_1A).    52  7e-04  2
BP187516|BP187516.1 Dugesia japonica cDNA, clone: 00331_HN, expressed in the head.    42  8e-04  2
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT070546_1(BT070546|pid:none) Picea sitchensis clone WS02735_F19...   239   9e-62
EF150642_1(EF150642|pid:none) Populus tremuloides serine hydroxy...   236   1e-60
EF082716_1(EF082716|pid:none) Picea sitchensis clone WS0297_A18 ...   235   1e-60
GN104742_1(GN104742|pid:none) Sequence 9523 from Patent WO200903...   233   8e-60
GN104744_1(GN104744|pid:none) Sequence 9525 from Patent WO200903...   233   8e-60
CS497866_1(CS497866|pid:none) Sequence 139 from Patent WO2007011...   230   5e-59
CS497860_1(CS497860|pid:none) Sequence 133 from Patent WO2007011...   230   5e-59
AF361589_1(AF361589|pid:none) Arabidopsis thaliana AT4g13930/dl3...   228   2e-58
CS497872_1(CS497872|pid:none) Sequence 145 from Patent WO2007011...   228   2e-58
CS497728_1(CS497728|pid:none) Sequence 1 from Patent WO2007011736.    228   2e-58
protein update 2009. 7.31
PSORT 

 psg: 0.69  gvh: 0.51  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: peroxisomal
	  4.0 %: cytoskeletal

>> prediction for VSF165 is nuc
5' end seq. ID VSF165F
5' end seq. 
>VSF165F.Seq
TAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATCAAGAGCAGTTAT
GGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCCAGGTTCAAGATA
TTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAAGAGAGCATTTAC
TCTCATCCAACGGGAATGCTTTTAATGCTCTCTTTTGACAAAGAGAGCATGANAAGCATT
CCGTNNGGATGAGAGTNANTGCNCNG----------
Length of 5' end seq. 266
3' end seq. ID VSF165Z
3' end seq. 
>VSF165Z.Seq
----------GAAGAGTACGACATTGAATCAAAGATCAATTTCGCAGTTTTCCCATCACT
CCAAGGTGGTCCACATGAAAATGTTATTGCTGGTGTTGCTGTTGCTCTCAAAGAAGCCGA
CTCTCAAGAATTCAAAGAGTATGCCCTTCAAGTTAAAAAGAATGCCGCTGCCATTGGTAA
TGCTCTCATGAACAAAGGTTATAAATTGGTTACAAATGGTACTGACAATCATTTAATTCT
TTGGGATTTAAGACCAAAGGAACTCACTGGTAATAAATTTGAAAAAGCTGCCGATATCGC
TAATATCACCGTCAATAAAAATGCCGTCCATGGTGATACCAATGCAATTTCACCAGGTGG
TATTCGTATTGGTTCATCTGCTCTCACAAGTAGAGGTTTAAAGGAAGCCGATTTTGAAAA
GATTGCTGATTTCCTTGATAGAATCGTTTCAATCTCTCTTGAAATTCAAGGTCGTGTCGG
TAAGAAATTGGTTGATTTTGTTGTTGAAATTAATAAATCAAAAGAATTATTAGATTTACG
TAAAGAAGTTGAAGAATTNTCTTCAAAATTCACTTTACCAGGTATTTAAATA
Length of 3' end seq. 582
Connected seq. ID VSF165P
Connected seq. 
>VSF165P.Seq
TAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATCAAGAGCAGTTAT
GGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCCAGGTTCAAGATA
TTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAAGAGAGCATTTAC
TCTCATCCAACGGGAATGCTTTTAATGCTCTCTTTTGACAAAGAGAGCATGANAAGCATT
CCGTNNGGATGAGAGTNANTGCNCNG----------GAAGAGTACGACATTGAATCAAAG
ATCAATTTCGCAGTTTTCCCATCACTCCAAGGTGGTCCACATGAAAATGTTATTGCTGGT
GTTGCTGTTGCTCTCAAAGAAGCCGACTCTCAAGAATTCAAAGAGTATGCCCTTCAAGTT
AAAAAGAATGCCGCTGCCATTGGTAATGCTCTCATGAACAAAGGTTATAAATTGGTTACA
AATGGTACTGACAATCATTTAATTCTTTGGGATTTAAGACCAAAGGAACTCACTGGTAAT
AAATTTGAAAAAGCTGCCGATATCGCTAATATCACCGTCAATAAAAATGCCGTCCATGGT
GATACCAATGCAATTTCACCAGGTGGTATTCGTATTGGTTCATCTGCTCTCACAAGTAGA
GGTTTAAAGGAAGCCGATTTTGAAAAGATTGCTGATTTCCTTGATAGAATCGTTTCAATC
TCTCTTGAAATTCAAGGTCGTGTCGGTAAGAAATTGGTTGATTTTGTTGTTGAAATTAAT
AAATCAAAAGAATTATTAGATTTACGTAAAGAAGTTGAAGAATTNTCTTCAAAATTCACT
TTACCAGGTATTTAAATA
Length of connected seq. 848
Full length Seq ID -
Full length Seq. -
Length of full length seq. -