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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF156
Library VS
(Link to library)
Clone ID VSF156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15575-1
Original site URL
Representative seq. ID VSF156E
(Link to Original site)
Representative DNA sequence 
>VSF156 (VSF156Q) /CSM/VS/VSF1-C/VSF156Q.Seq.d/
AAAAAAATGAAATTATTAAACTCACTAATTTTATTAGTTTTAACTTGTTTGGTATCGTCA
ATCAATACTCAATTCATTTCCATTCAAAAGTATGATTTTAGTGGAAATTGTAAAAATAGC
TCAGATTCAGCAAGTAGTTTTGAAGCATCAAGCGAATCAGCAGCAATTTGTATGCAAAAT
GATTTATTATCTGGTATAGTTACAAATGAGGGTGTTTGCTTAATATTTAATGAAGTTCCA
ACTACATTCATTATATCAACAAAAGGTGATTACATTGTTCGTTCAATTTATGATATAAAC
GATAATAATTGTCAAGGTGGTATTATTGAAAATAAAGCAATTGAAATTGATGAATGTTTT
GTTGAGTGTGCTGATGATTACCATGGAAGTACATATTTATTTTCAACTGAAACATCTTTA
AATTACCCATCTAATACCTTCATGGAAATATCTTACAATGGTGAATGTGATGGACAATGG
AAAACTAGTTTCAATTATCTTCAATATTACATTGTAAATAAATGTAATGTTGCACATGAA
ATTGAAACTCATACCTNTTCTGTAGGNTGTNATAGTNCTTCNTCTTGGGNNAGTGAANAC
GCTGGTG
sequence update 2001. 3.25
Translated Amino Acid sequence 
KKMKLLNSLILLVLTCLVSSINTQFISIQKYDFSGNCKNSSDSASSFEASSESAAICMQN
DLLSGIVTNEGVCLIFNEVPTTFIISTKGDYIVRSIYDINDNNCQGGIIENKAIEIDECF
VECADDYHGSTYLFSTETSLNYPSNTFMEISYNGECDGQWKTSFNYLQYYIVNKCNVAHE
IETHTXSVGCXSXSSWXSEXAG
Translated Amino Acid sequence (All Frames) 
Frame A:
KKMKLLNSLILLVLTCLVSSINTQFISIQKYDFSGNCKNSSDSASSFEASSESAAICMQN
DLLSGIVTNEGVCLIFNEVPTTFIISTKGDYIVRSIYDINDNNCQGGIIENKAIEIDECF
VECADDYHGSTYLFSTETSLNYPSNTFMEISYNGECDGQWKTSFNYLQYYIVNKCNVAHE
IETHTXSVGCXSXSSWXSEXAG


Frame B:
kk*ny*th*fy*f*lvwyrqsilnsfpfksmilveivkiaqiqqvvlkhqanqqqfvckm
iyylv*lqmrvfa*ylmkfqlhslyqqkvitlfvqfmi*tiiivkvvllkikqlklmnvl
lsvlmitmevhiyfqlkhl*ithlipswkyltmvnvmdngklvsiifnitl*invmlhmk
lklipxl*xvivlxlgxvxtlv


Frame C:
kneiikltnfisfnlfgivnqysihfhskv*f*wkl*k*lrfsk*f*sikrissnlyak*
fiiwysyk*gcllni**ssnyihyinkr*lhcsfnl*ykr**lsrwyy*k*sn*n**mfc
*vc**lpwkyififn*nifklpi*ylhgnilqw*m*wtmen*fqlssilhck*m*cct*n
*nsylfcrxx*xfxlgx*xrw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF156 (VSF156Q) /CSM/VS/VSF1-C/VSF156Q.Seq.d/                       1142   0.0
SSD546 (SSD546Q) /CSM/SS/SSD5-B/SSD546Q.Seq.d/                        533   e-150
SSD795 (SSD795Q) /CSM/SS/SSD7-D/SSD795Q.Seq.d/                        418   e-116
VFC136 (VFC136Q) /CSM/VF/VFC1-B/VFC136Q.Seq.d/                         38   0.15
CFD788 (CFD788Q) /CSM/CF/CFD7-D/CFD788Q.Seq.d/                         36   0.60
VSK460 (VSK460Q) /CSM/VS/VSK4-C/VSK460Q.Seq.d/                         34   2.4
VSJ631 (VSJ631Q) /CSM/VS/VSJ6-B/VSJ631Q.Seq.d/                         34   2.4
VSJ621 (VSJ621Q) /CSM/VS/VSJ6-A/VSJ621Q.Seq.d/                         34   2.4
VSI828 (VSI828Q) /CSM/VS/VSI8-B/VSI828Q.Seq.d/                         34   2.4
VSI531 (VSI531Q) /CSM/VS/VSI5-B/VSI531Q.Seq.d/                         34   2.4
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   603   0.0    6
AP003187|AP003187.2 Clostridium perfringens DNA, complete genome, section 3/10.    40   0.007  8
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32   0.008  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   0.017  25
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    34   0.018  11
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    34   0.031  12
BE025327|BE025327.1 945028D06.y2 945 - Mixed adult tissues from Walbot lab, same as 707 (SK) Zea mays cDNA, mRNA sequence.    36   0.032  2
BE025326|BE025326.1 945028D06.Y1 945 - Mixed adult tissues from Walbot lab, same as 707 (SK) Zea mays cDNA, mRNA sequence.    36   0.059  2
AL929301|AL929301.6 Zebrafish DNA sequence from clone BUSM1-SL7 Contains two genes for  novel serine proteases, a novel serine protease pseudogene, three  genes similar to vertebrate PIM1 (pim-1 oncogene), a putative novel  gene and a CpG island.    36   0.066  5
BX649496|BX649496.11 Zebrafish DNA sequence from clone CH211-212I24 in linkage group 18.    34   0.080  11
dna update 2004. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115612_32(AC115612|pid:none) Dictyostelium discoideum chromoso...   302   6e-81
AC115612_34(AC115612|pid:none) Dictyostelium discoideum chromoso...   220   2e-56
AC115612_33(AC115612|pid:none) Dictyostelium discoideum chromoso...   219   4e-56
AC115612_7(AC115612|pid:none) Dictyostelium discoideum chromosom...    72   9e-12
AC115584_4(AC115584|pid:none) Dictyostelium discoideum chromosom...    49   1e-04
AC115584_2(AC115584|pid:none) Dictyostelium discoideum chromosom...    47   4e-04
EU084034_1(EU084034|pid:none) Bilobella aurantiaca mitochondrion...    34   3.7
CP000551_906(CP000551|pid:none) Prochlorococcus marinus str. AS9...    33   6.3
protein update 2009. 3.22
PSORT 

 psg: 0.96  gvh: 0.82  alm: 0.40  top: 0.27  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoplasmic
	  4.0 %: nuclear

>> prediction for VSF156 is exc
5' end seq. ID VSF156F
5' end seq. 
>VSF156F.Seq
AAAAAAATGAAATTATTAAACTCACTAATTTTATTAGTTTTAACTTGTTTGGTATCGTCA
ATCAATACTCAATTCATTTCCATTCAAAAGTATGATTTTAGTGGAAATTGTAAAAATAGC
TCAGATTCAGCAAGTAGTTTTGAAGCATCAAGCGAATCAGCAGCAATTTGTATGCAAAAT
GATTTATTATCTGGTATAGTTACAAATGAGGGTGTTTGCTTAATATTTAATGAAGTTCCA
ACTACATTCATTATATCAACAAAAGGTGATTACATTGTTCGTTCAATTTATGATATAAAC
GATAATAATTGTCAAGGTGGTATTATTGAAAATAAAGCAATTGAAATTGATGAATGTTTT
GTTGAGTGTGCTGATGATTACCATGGAAGTACATATTTATTTTCAACTGAAACATCTTTA
AATTAC----------
Length of 5' end seq. 426
3' end seq. ID VSF156Z
3' end seq. 
>VSF156Z.Seq
----------ATTGTAAAAATAGCTCAGATTCAGCAAGTAGTTTTGAAGCATCAAGCGAA
TCAGCAGCAATTTGTATGCAAAATGATTTATTATCTGGTATAGTTACAAATGAGGGTGTT
TGCTTAATATTTAATGAAGTTCCAACTACATTCATTATATCAACAAAAGGTGATTACATT
GTTCGTTCAATTTATGATATAAACGATAATAATTGTCAAGGTGGTATTATTGAAAATAAA
GCAATTGAAATTGATGAATGTTTTGTTGAGTGTGCTGATGATTACCATGGAAGTACATAT
TTATTTTCAACTGAAACATCTTTAAATTACCCATCTAATACCTTCATGGAAATATCTTAC
AATGGTGAATGTGATGGACAATGGAAAACTAGTTTCAATTATCTTCAATATTACATTGTA
AATAAATGTAATGTTGCACATGAAATTGAAACTCATACCTNTTCTGTAGGNTGTNATAGT
NCTTCNTCTTGGGNNAGTGAANACGCTGGTG
Length of 3' end seq. 501
Connected seq. ID VSF156P
Connected seq. 
>VSF156P.Seq
AAAAAAATGAAATTATTAAACTCACTAATTTTATTAGTTTTAACTTGTTTGGTATCGTCA
ATCAATACTCAATTCATTTCCATTCAAAAGTATGATTTTAGTGGAAATTGTAAAAATAGC
TCAGATTCAGCAAGTAGTTTTGAAGCATCAAGCGAATCAGCAGCAATTTGTATGCAAAAT
GATTTATTATCTGGTATAGTTACAAATGAGGGTGTTTGCTTAATATTTAATGAAGTTCCA
ACTACATTCATTATATCAACAAAAGGTGATTACATTGTTCGTTCAATTTATGATATAAAC
GATAATAATTGTCAAGGTGGTATTATTGAAAATAAAGCAATTGAAATTGATGAATGTTTT
GTTGAGTGTGCTGATGATTACCATGGAAGTACATATTTATTTTCAACTGAAACATCTTTA
AATTAC----------ATTGTAAAAATAGCTCAGATTCAGCAAGTAGTTTTGAAGCATCA
AGCGAATCAGCAGCAATTTGTATGCAAAATGATTTATTATCTGGTATAGTTACAAATGAG
GGTGTTTGCTTAATATTTAATGAAGTTCCAACTACATTCATTATATCAACAAAAGGTGAT
TACATTGTTCGTTCAATTTATGATATAAACGATAATAATTGTCAAGGTGGTATTATTGAA
AATAAAGCAATTGAAATTGATGAATGTTTTGTTGAGTGTGCTGATGATTACCATGGAAGT
ACATATTTATTTTCAACTGAAACATCTTTAAATTACCCATCTAATACCTTCATGGAAATA
TCTTACAATGGTGAATGTGATGGACAATGGAAAACTAGTTTCAATTATCTTCAATATTAC
ATTGTAAATAAATGTAATGTTGCACATGAAATTGAAACTCATACCTNTTCTGTAGGNTGT
NATAGTNCTTCNTCTTGGGNNAGTGAANACGCTGGTG
Length of connected seq. 927
Full length Seq ID VSF156E
Full length Seq. 
>VSF156E.Seq
AAAAAAATGAAATTATTAAACTCACTAATTTTATTAGTTTTAACTTGTTTGGTATCGTCA
ATCAATACTCAATTCATTTCCATTCAAAAGTATGATTTTAGTGGAAATTGTAAAAATAGC
TCAGATTCAGCAAGTAGTTTTGAAGCATCAAGCGAATCAGCAGCAATTTGTATGCAAAAT
GATTTATTATCTGGTATAGTTACAAATGAGGGTGTTTGCTTAATATTTAATGAAGTTCCA
ACTACATTCATTATATCAACAAAAGGTGATTACATTGTTCGTTCAATTTATGATATAAAC
GATAATAATTGTCAAGGTGGTATTATTGAAAATAAAGCAATTGAAATTGATGAATGTTTT
GTTGAGTGTGCTGATGATTACCATGGAAGTACATATTTATTTTCAACTGAAACATCTTTA
AATTACCCATCTAATACCTTCATGGAAATATCTTACAATGGTGAATGTGATGGACAATGG
AAAACTAGTTTCAATTATCTTCAATATTACATTGTAAATAAATGTAATGTTGCACATGAA
ATTGAAACTCATACCTNTTCTGTAGGNTGTNATAGTNCTTCNTCTTGGGNNAGTGAANAC
GCTGGTG
Length of full length seq. 607