VSF150
Library VS
(Link to library)
Clone ID VSF150
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16226-1
Original site URL
Representative seq. ID VSF150P
(Link to Original site)
Representative DNA sequence
>VSF150 (VSF150Q) /CSM/VS/VSF1-C/VSF150Q.Seq.d/
ATGATGCTGAAGAACAAGAAGAAGACGAAGTCGAAGAAGAGGAAGAAGAACAACAAGAAG
AAGAAGAAGGTGAAAATGATGAAGAATTAACTGAAGGAGCCGAAGAAGATTCCCACGAAC
ACCCATTCGAAATTGAAGTCACACCAAAAGGTAACGCTTCCGGTAAACTCACTTTTGGTT
GTTATGCTTCACACGACGGTAACTACACTGTCTCTGGTTTCTACAAAGGTGGTTTCGGTG
AAACTGTAAACCCAGTCGATATTGGTGGAACTTCAATGGAATTCCAAGACAATATCTTAT
TAGTTTTACAACAATACGGTATCAATGAACGTTTATCTTTCTTCATCCACGATTATGTCC
ACAACAAGAAAATCAATGATTACGTTGAATCATTCGAAGCCTTAAAAGATTTTGTTTCAA
AAGAATAAATTAAATTTTAAATAAAAAAAATNAAAAAAAAAXXXXXXXXXXANTGGTGGA
ACTTCNATGGAATTCCAAGGCAAAATNTTATTNGTTTTNC
sequence update 2001. 3.22
Translated Amino Acid sequence
*c*rtrrrrsrrrgrrttrrrrr*k**rin*rsrrrfprtpirn*shtkr*rfr*thfwl
lcftrr*lhclwflqrwfr*nckpsrywwnfngiprqylisfttiryq*tfiflhprlcp
qqenq*lr*iirslkrfcfkrin*ILNKKNXKK---

---XGGTSMEFQGKXLXVX


Translated Amino Acid sequence (All Frames)
Frame A:
mmlknkkktkskkrkknnkkkkkvkmmkn*lkepkkiptnthsklkshqkvtlpvnsllv
vmlhttvttlslvstkvvsvkl*tqsilvelqwnsktisy*fynntvsmnvylssstims
ttrksmitlnhskp*kilfqknklnfk*kkxkk---

---XGGTSMEFQGKXLXVX

Frame B:
*c*rtrrrrsrrrgrrttrrrrr*k**rin*rsrrrfprtpirn*shtkr*rfr*thfwl
lcftrr*lhclwflqrwfr*nckpsrywwnfngiprqylisfttiryq*tfiflhprlcp
qqenq*lr*iirslkrfcfkrin*ILNKKNXKK---

---xvelxwnskakxyxfx

Frame C:
daeeqeedeveeeeeeqqeeeegendeeltegaeedshehpfeievtpkgnasgkltfgc
yashdgnytvsgfykggfgetvnpvdiggtsmefqdnillvlqqyginerlsffihdyvh
nkkindyvesfealkdfvske*ikf*ikkxkkk---

---wwnfxgiprqnxixf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI215 (VSI215Q) /CSM/VS/VSI2-A/VSI215Q.Seq.d/ 739 0.0
VSF150 (VSF150Q) /CSM/VS/VSF1-C/VSF150Q.Seq.d/ 739 0.0
VSB674 (VSB674Q) /CSM/VS/VSB6-D/VSB674Q.Seq.d/ 739 0.0
VSE558 (VSE558Q) /CSM/VS/VSE5-C/VSE558Q.Seq.d/ 726 0.0
FC-BG07 (FC-BG07Q) /CSM/FC/FC-BG/FC-BG07Q.Seq.d/ 724 0.0
FC-AW06 (FC-AW06Q) /CSM/FC/FC-AW/FC-AW06Q.Seq.d/ 724 0.0
FC-336 (FC-336Q) /CSM/CG/CG-FC/FC-336Q.Seq.d/ 724 0.0
CHK474 (CHK474Q) /CSM/CH/CHK4-D/CHK474Q.Seq.d/ 684 0.0
VFJ605 (VFJ605Q) /CSM/VF/VFJ6-A/VFJ605Q.Seq.d/ 587 e-167
VFL352 (VFL352Q) /CSM/VF/VFL3-C/VFL352Q.Seq.d/ 369 e-101

own update 2003. 1. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB829712|CB829712.1 ri04b08.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5', mRNA sequence. 46 0.43 1
CB829713|CB829713.1 ri04b09.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5', mRNA sequence. 46 0.43 1
CB933350|CB933350.1 ri28g11.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5', mRNA sequence. 46 0.43 1
CB830721|CB830721.1 ri08e07.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5', mRNA sequence. 46 0.43 1
AC115924|AC115924.4 Mus musculus clone RP24-511O11, WORKING DRAFT SEQUENCE, 4 ordered pieces. 44 1.7 1
AZ246748|AZ246748.1 RPCI-23-58A20.TV RPCI-23 Mus musculus genomic clone RPCI-23-58A20, DNA sequence. 44 1.7 1
AC021350|AC021350.3 Homo sapiens clone RP11-24M18, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 1.7 1
AC115730|AC115730.2 Mus musculus clone RP23-174B21, WORKING DRAFT SEQUENCE, 38 ordered pieces. 44 1.7 1
Z99833|Z99833.1 Euglena deses chloroplast psbC gene: complete group III twintron, complete internal mat1 gene, partial 5' and 3' psbC exons. 44 1.7 1
AW496092|AW496092.1 up46h09.y1 Soares_mouse_NMGB_bcell Mus musculus cDNA clone IMAGE:2749217 5' similar to gb:X52634 Murine tlm oncogene for tlm protein (MOUSE);, mRNA sequence. 44 1.7 1
dna update 2003. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY086223_1(AY086223|pid:none) Arabidopsis thaliana clone 22656 m... 41 0.020
AP004702_16(AP004702|pid:none) Oryza sativa Japonica Group genom... 38 0.13
CP000721_1484(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 36 0.50
(P40513) RecName: Full=Mitochondrial acidic protein MAM33; Flags... 35 0.86
CR380959_553(CR380959|pid:none) Candida glabrata strain CBS138 c... 35 0.86
AY557860_1(AY557860|pid:none) Saccharomyces cerevisiae clone FLH... 35 0.86
CP001348_1465(CP001348|pid:none) Clostridium cellulolyticum H10,... 35 1.1
EU960105_1(EU960105|pid:none) Zea mays clone 221712 mitochondria... 34 2.5
CR382127_70(CR382127|pid:none) Yarrowia lipolytica strain CLIB12... 33 4.3
BC138874_1(BC138874|pid:none) Mus musculus poly (ADP-ribose) pol... 33 5.5
protein update 2009. 7.31
PSORT

psg: 0.78 gvh: 0.16 alm: 0.66 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
24.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for VSF150 is nuc

5' end seq. ID VSF150F
5' end seq.
>VSF150F.Seq
ATGATGCTGAAGAACAAGAAGAAGACGAAGTCGAAGAAGAGGAAGAAGAACAACAAGAAG
AAGAAGAAGGTGAAAATGATGAAGAATTAACTGAAGGAGCCGAAGAAGATTCCCACGAAC
ACCCATTCGAAATTGAAGTCACACCAAAAGGTAACGCTTCCGGTAAACTCACTTTTGGTT
GTTATGCTTCACACGACGGTAACTACACTGTCTCTGGTTTCTACAAAGGTGGTTTCGGTG
AAACTGTAAACCCAGTCGATATTGGTGGAACTTCAATGGAATTCCAAGACAATATCTTAT
TAGTTTTACAACAATACGGTATCAATGAACGTTTATCTTTCTTCATCCACGATTATGTCC
ACAACAAGAAAATCAATGATTACGTTGAATCATTCGAAGCCTTAAAAGATTTTGTTTCAA
AAGAATAAATTAAATTTTAAATAAAAAAAATNAAAAAAAAA----------
Length of 5' end seq. 461
3' end seq. ID VSF150Z
3' end seq.
>VSF150Z.Seq
----------ANTGGTGGAACTTCNATGGAATTCCAAGGCAAAATNTTATTNGTTTTNC
Length of 3' end seq. 49
Connected seq. ID VSF150P
Connected seq.
>VSF150P.Seq
ATGATGCTGAAGAACAAGAAGAAGACGAAGTCGAAGAAGAGGAAGAAGAACAACAAGAAG
AAGAAGAAGGTGAAAATGATGAAGAATTAACTGAAGGAGCCGAAGAAGATTCCCACGAAC
ACCCATTCGAAATTGAAGTCACACCAAAAGGTAACGCTTCCGGTAAACTCACTTTTGGTT
GTTATGCTTCACACGACGGTAACTACACTGTCTCTGGTTTCTACAAAGGTGGTTTCGGTG
AAACTGTAAACCCAGTCGATATTGGTGGAACTTCAATGGAATTCCAAGACAATATCTTAT
TAGTTTTACAACAATACGGTATCAATGAACGTTTATCTTTCTTCATCCACGATTATGTCC
ACAACAAGAAAATCAATGATTACGTTGAATCATTCGAAGCCTTAAAAGATTTTGTTTCAA
AAGAATAAATTAAATTTTAAATAAAAAAAATNAAAAAAAAA----------ANTGGTGGA
ACTTCNATGGAATTCCAAGGCAAAATNTTATTNGTTTTNC
Length of connected seq. 510
Full length Seq ID -
Full length Seq. -
Length of full length seq. -