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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF147
Library VS
(Link to library)
Clone ID VSF147
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSF147F
(Link to Original site)
Representative DNA sequence 
>VSF147 (VSF147Q) /CSM/VS/VSF1-B/VSF147Q.Seq.d/
ACTAGTTCTAGATCGCGAGCGGTCGACCCTTTTTTTTTTTTTTTTNATTAATTTTTAATT
TTTTTTGGAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
*f*IASGRPFFFFFXLIFNFFW---
Translated Amino Acid sequence (All Frames) 
Frame A:
tssrsravdpfffffx*fliffg---


Frame B:
lvldrerstlffffxinf*ffl---


Frame C:
*f*IASGRPFFFFFXLIFNFFW---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF147 (VSF147Q) /CSM/VS/VSF1-B/VSF147Q.Seq.d/                         58   2e-08
SSK277 (SSK277Q) /CSM/SS/SSK2-D/SSK277Q.Seq.d/                         48   2e-05
SLC254 (SLC254Q) /CSM/SL/SLC2-C/SLC254Q.Seq.d/                         48   2e-05
SLC236 (SLC236Q) /CSM/SL/SLC2-B/SLC236Q.Seq.d/                         48   2e-05
VSD568 (VSD568Q) /CSM/VS/VSD5-C/VSD568Q.Seq.d/                         44   3e-04
SSM380 (SSM380Q) /CSM/SS/SSM3-D/SSM380Q.Seq.d/                         44   3e-04
SSM332 (SSM332Q) /CSM/SS/SSM3-B/SSM332Q.Seq.d/                         44   3e-04
SSL895 (SSL895Q) /CSM/SS/SSL8-D/SSL895Q.Seq.d/                         44   3e-04
SSL209 (SSL209Q) /CSM/SS/SSL2-A/SSL209Q.Seq.d/                         44   3e-04
SSH125 (SSH125Q) /CSM/SS/SSH1-B/SSH125Q.Seq.d/                         44   3e-04
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG914118|BG914118.1 602805783F1 NCI_CGAP_Brn67 Homo sapiens cDNA clone IMAGE:4937877 5', mRNA sequence.    50  0.003  1
CB897384|CB897384.1 tric011xa15 T.reesei mycelial culture, Version 3 april Hypocrea jecorina cDNA clone tric011xa15, mRNA sequence.    50  0.003  1
BI256995|BI256995.1 602978827F1 NCI_CGAP_Li9 Mus musculus cDNA clone IMAGE:5123695 5', mRNA sequence.    50  0.003  1
AL589345|AL589345.1 Homo sapiens mRNA; EST DKFZp451J2415_r1  (from clone DKFZp451J2415).    50  0.003  1
CD722181|CD722181.1 oj06e07.y1 Human lacrimal gland, unamplified: oj Homo sapiens cDNA clone oj06e07 5', mRNA sequence.    50  0.003  1
BM593534|BM593534.1 17000687443509 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449692125 5', mRNA sequence.    50  0.003  1
CD723035|CD723035.1 oj17b11.y1 Human lacrimal gland, unamplified: oj Homo sapiens cDNA clone oj17b11 5', mRNA sequence.    50  0.003  1
AJ442121|AJ442121.1 Gallus gallus EST, clone library dkfz426, clone 1a24r1.    50  0.003  1
BI738183|BI738183.1 603361607F1 NIH_MGC_94 Mus musculus cDNA clone IMAGE:5368873 5', mRNA sequence.    50  0.003  1
BM474173|BM474173.1 AGENCOURT_6489897 NIH_MGC_71 Homo sapiens cDNA clone IMAGE:5521544 5', mRNA sequence.    50  0.003  1
dna update 2003. 8.23
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.302    0.116    0.310

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 33,170,025
protein update 2009. 7.31
PSORT -
5' end seq. ID VSF147F
5' end seq. 
>VSF147F.Seq
ACTAGTTCTAGATCGCGAGCGGTCGACCCTTTTTTTTTTTTTTTTNATTAATTTTTAATT
TTTTTTGGAA----------
Length of 5' end seq. 70
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -