VSF143
Library VS
(Link to library)
Clone ID VSF143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSF143F
(Link to Original site)
Representative DNA sequence
>VSF143 (VSF143Q) /CSM/VS/VSF1-B/VSF143Q.Seq.d/
TTTTTTTTTTAATTCCGGGAAANTAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
FFFNSGKXKK---


Translated Amino Acid sequence (All Frames)
Frame A:
fff*frexkkk---


Frame B:
FFFNSGKXKK---


Frame C:
fflipgx*kk---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5
Number of Sequences: 97611
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 0
length of query: 44
length of database: 80,480,566
effective HSP length: 16
effective length of query: 28
effective length of database: 78,918,790
effective search space: 2209726120
effective search space used: 2209726120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 14781
Number of Sequences: 25388852
Number of extensions: 14781
Number of successful extensions: 14662
Number of sequences better than 10.0: 0
length of query: 44
length of database: P,810,167,932
effective HSP length: 20
effective length of query: 24
effective length of database: P,302,390,892
effective search space: 775257381408
effective search space used: 775257381408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 8.23
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 32,679,513
protein update 2009. 7.31
PSORT -
5' end seq. ID VSF143F
5' end seq.
>VSF143F.Seq
TTTTTTTTTTAATTCCGGGAAANTAAAAAAAAAA----------
Length of 5' end seq. 34
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -