VSF138
Library VS
(Link to library)
Clone ID VSF138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14973-1
Original site URL
Representative seq. ID VSF138P
(Link to Original site)
Representative DNA sequence
>VSF138 (VSF138Q) /CSM/VS/VSF1-B/VSF138Q.Seq.d/
AACTGCTGGTCACGATTTCTATACTCGTGGTCACTATGTTGCAGGCTTAAAAGTCGATGG
TATGGATGTTTTCGCCGTCAAAGAAGCTGGTAAATACGCCGCTGAATGGTGTAGAGCTGG
TAATGGTCCAATCATTTTAGAAATGGATACCTATCGTTATGTAGGTCACTCTATGTCTGA
TCCAGGTATCACTTATCGTACAAGAGAAGAAGTTAACCACGTTAGACAAACTAGAGATCC
AATTGAAAACATTCGTCAAATCATCTTGGACAATAAAATCGCAACTGAAGATCAACTCGC
TGCCATCGAAGAAACCGTTAGAGATGAAATGGAAAAAGCCTCTGAAAAAGCTATCGCTGC
TCCATTACCACAAGCTCGTGAACTCTTTACCAACGTTTACCTCCAAGAAGTTCCAGTAAG
AGGTGTTGAATTTGTTAACAGTTTCAAACCATAAATTAATATTAACTTTTTTTACTTATT
AAAAAAAAAAGTTTTAATTTTTAAAAAAAAAAXXXXXXXXXXTGGTCACTATGTTGCAGG
CTTAAAAGTCGATGGTATGGATGTTTTCGCCGTCAAAGAAGCTGGTAAANACGCCGCTGA
ATGGTGTAAAGCTGGTAATGGTCCAATCATTTTAGAAATGGATACCTATCGTTATGTAGG
TCACTCTATGTCTGATCCAGGTATCACTTATCGTACAANANAAGAAGTTAACCACGTTAG
ACAAACTANAGATCCAATTGAAAACATTCGTCAAATCATCTTGGACAATAAAATCGCAAC
TGAAGATCAACTCGCTGCCATCGAAGAAACCGTTAGAGATGAAATGGAAAAAGCCTCTGA
AAAAGCTATCGCTGCTCCATTACCACAAGCTCGTGAACTCTTTACCAACGTTTACCTCCA
AGAAGTTCCAGTAANAGGTGTTGAATTTGTTAACAGTTTCAAACCATAAATTAATATTAA
CTTTTTTACTTATTAAAAAAAAAAG
sequence update 2001. 3.22
Translated Amino Acid sequence
taghdfytrghyvaglkvdgmdvfavkeagkyaaewcragngpiilemdtyryvghsmsd
pgityrtreevnhvrqtrdpienirqiildnkiatedqlaaieetvrdemekasekaiaa
plpqarelftnvylqevpvrgvefvnsfkp*ININFFYLLKKKVLIFKKK---

---GHYVAGLKVDGMDVFAVKEAGKXAAEWCKAGNGPIILEMDTYRYVGHSMSDPGITYR
TXXEVNHVRQTXDPIENIRQIILDNKIATEDQLAAIEETVRDEMEKASEKAIAAPLPQAR
ELFTNVYLQEVPVXGVEFVNSFKP*ininffty*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
ncwsrflyswslccrlksrwygcfrrqrsw*irr*mv*sw*wsnhfrngylslcrslyv*
sryhlsykrrs*pr*tn*rsn*khssnhlgq*nrn*rstrchrrnr*r*ngksl*ksyrc
sittss*tlyqrlpprssskrc*ic*qfqtin*y*lfllikkksfnf*kk---

---wslccrlksrwygcfrrqrsw*xrr*mv*sw*wsnhfrngylslcrslyv*sryhls
yxxrs*pr*tnxrsn*khssnhlgq*nrn*rstrchrrnr*r*ngksl*ksyrcsittss
*tlyqrlpprsssxrc*ic*qfqtin*y*lfyllkkk

Frame B:
taghdfytrghyvaglkvdgmdvfavkeagkyaaewcragngpiilemdtyryvghsmsd
pgityrtreevnhvrqtrdpienirqiildnkiatedqlaaieetvrdemekasekaiaa
plpqarelftnvylqevpvrgvefvnsfkp*ININFFYLLKKKVLIFKKK---

---GHYVAGLKVDGMDVFAVKEAGKXAAEWCKAGNGPIILEMDTYRYVGHSMSDPGITYR
TXXEVNHVRQTXDPIENIRQIILDNKIATEDQLAAIEETVRDEMEKASEKAIAAPLPQAR
ELFTNVYLQEVPVXGVEFVNSFKP*ininffty*kkk

Frame C:
llvtisilvvtmlqa*ksmvwmfspskklvntplngvelvmvqsf*kwipivm*vtlcli
qvslivqekklttldkleiqlktfvksswtiksqlkinslpskkplemkwkkplkklsll
hyhklvnslptftskkfq*evlnlltvsnhkliltffty*kkkf*flkkk---

---vtmlqa*ksmvwmfspskklvxtplngvklvmvqsf*kwipivm*vtlcliqvsliv
qxkklttldklxiqlktfvksswtiksqlkinslpskkplemkwkkplkklsllhyhklv
nslptftskkfq*xvlnlltvsnhkliltfllikkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF138 (VSF138Q) /CSM/VS/VSF1-B/VSF138Q.Seq.d/ 924 0.0
VSE626 (VSE626Q) /CSM/VS/VSE6-B/VSE626Q.Seq.d/ 924 0.0
SSE806 (SSE806Q) /CSM/SS/SSE8-A/SSE806Q.Seq.d/ 924 0.0
SLI178 (SLI178Q) /CSM/SL/SLI1-D/SLI178Q.Seq.d/ 924 0.0
SFI357 (SFI357Q) /CSM/SF/SFI3-C/SFI357Q.Seq.d/ 924 0.0
SFI495 (SFI495Q) /CSM/SF/SFI4-D/SFI495Q.Seq.d/ 918 0.0
SFI644 (SFI644Q) /CSM/SF/SFI6-B/SFI644Q.Seq.d/ 908 0.0
AFE319 (AFE319Q) /CSM/AF/AFE3-A/AFE319Q.Seq.d/ 908 0.0
VFM465 (VFM465Q) /CSM/VF/VFM4-C/VFM465Q.Seq.d/ 902 0.0
VFL810 (VFL810Q) /CSM/VF/VFL8-A/VFL810Q.Seq.d/ 898 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AK105105|AK105105.1 Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E08, full insert sequence. 46 7e-05 3
BQ966268|BQ966268.1 QHB25C24.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB25C24, mRNA sequence. 38 2e-04 3
CD852550|CD852550.1 DH0ALL29ZE12ZZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR529E12, mRNA sequence. 36 3e-04 3
CA525191|CA525191.1 KS12050G04 KS12 Capsicum annuum cDNA, mRNA sequence. 40 3e-04 2
CA518455|CA518455.1 KS10009C11 KS10 Capsicum annuum cDNA, mRNA sequence. 40 8e-04 3
CC819103|CC819103.1 1O0005I12R Oxytricha plasmid UUGC1O library Sterkiella histriomuscorum genomic clone UUGC1O0005I12 R, genomic survey sequence. 42 0.001 3
BF096522|BF096522.1 EST360549 tomato nutrient deficient roots Lycopersicon esculentum cDNA clone cLEW12E7 5' sequence similar to pyruvate dehydrogenase E1 alpha subunit {Zea mays}, mRNA sequence. 46 0.001 2
BG526361|BG526361.1 59-38 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence. 52 0.001 2
AF209924|AF209924.1 Lycopersicon esculentum pyruvate dehydrogenase mRNA, partial cds. 46 0.003 2
BU238367|BU238367.1 Ds01_15g02_A Ds01_AAFC_ECORC_cold_stressed_Flixweed_seedlings Descurainia sophia cDNA clone Ds01_15g02, mRNA sequence. 44 0.006 3
dna update 2003. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C70) RecName: Full=Pyruvate dehydrogenase E1 component subun... 305 2e-81
EU186336_1(EU186336|pid:none) Brassica rapa clone S66 pyruvate d... 156 1e-36
AB090280_1(AB090280|pid:none) Beta vulgaris PDH E1a-2 mRNA for p... 154 6e-36
(Q8H1Y0) RecName: Full=Pyruvate dehydrogenase E1 component subun... 154 6e-36
CP000581_566(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 152 2e-35
AF209924_1(AF209924|pid:none) Lycopersicon esculentum pyruvate d... 151 4e-35
DQ191640_1(DQ191640|pid:none) Solanum tuberosum unknown mRNA. 150 5e-35
(P52902) RecName: Full=Pyruvate dehydrogenase E1 component subun... 150 5e-35
BT038357_1(BT038357|pid:none) Zea mays full-length cDNA clone ZM... 150 7e-35
EU976956_1(EU976956|pid:none) Zea mays clone 994766 pyruvate deh... 150 7e-35
protein update 2009. 7.31
PSORT

psg: 0.52 gvh: 0.30 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VSF138 is cyt

5' end seq. ID VSF138F
5' end seq.
>VSF138F.Seq
AACTGCTGGTCACGATTTCTATACTCGTGGTCACTATGTTGCAGGCTTAAAAGTCGATGG
TATGGATGTTTTCGCCGTCAAAGAAGCTGGTAAATACGCCGCTGAATGGTGTAGAGCTGG
TAATGGTCCAATCATTTTAGAAATGGATACCTATCGTTATGTAGGTCACTCTATGTCTGA
TCCAGGTATCACTTATCGTACAAGAGAAGAAGTTAACCACGTTAGACAAACTAGAGATCC
AATTGAAAACATTCGTCAAATCATCTTGGACAATAAAATCGCAACTGAAGATCAACTCGC
TGCCATCGAAGAAACCGTTAGAGATGAAATGGAAAAAGCCTCTGAAAAAGCTATCGCTGC
TCCATTACCACAAGCTCGTGAACTCTTTACCAACGTTTACCTCCAAGAAGTTCCAGTAAG
AGGTGTTGAATTTGTTAACAGTTTCAAACCATAAATTAATATTAACTTTTTTTACTTATT
AAAAAAAAAAGTTTTAATTTTTAAAAAAAAAA----------
Length of 5' end seq. 512
3' end seq. ID VSF138Z
3' end seq.
>VSF138Z.Seq
----------TGGTCACTATGTTGCAGGCTTAAAAGTCGATGGTATGGATGTTTTCGCCG
TCAAAGAAGCTGGTAAANACGCCGCTGAATGGTGTAAAGCTGGTAATGGTCCAATCATTT
TAGAAATGGATACCTATCGTTATGTAGGTCACTCTATGTCTGATCCAGGTATCACTTATC
GTACAANANAAGAAGTTAACCACGTTAGACAAACTANAGATCCAATTGAAAACATTCGTC
AAATCATCTTGGACAATAAAATCGCAACTGAAGATCAACTCGCTGCCATCGAAGAAACCG
TTAGAGATGAAATGGAAAAAGCCTCTGAAAAAGCTATCGCTGCTCCATTACCACAAGCTC
GTGAACTCTTTACCAACGTTTACCTCCAAGAAGTTCCAGTAANAGGTGTTGAATTTGTTA
ACAGTTTCAAACCATAAATTAATATTAACTTTTTTACTTATTAAAAAAAAAAG
Length of 3' end seq. 463
Connected seq. ID VSF138P
Connected seq.
>VSF138P.Seq
AACTGCTGGTCACGATTTCTATACTCGTGGTCACTATGTTGCAGGCTTAAAAGTCGATGG
TATGGATGTTTTCGCCGTCAAAGAAGCTGGTAAATACGCCGCTGAATGGTGTAGAGCTGG
TAATGGTCCAATCATTTTAGAAATGGATACCTATCGTTATGTAGGTCACTCTATGTCTGA
TCCAGGTATCACTTATCGTACAAGAGAAGAAGTTAACCACGTTAGACAAACTAGAGATCC
AATTGAAAACATTCGTCAAATCATCTTGGACAATAAAATCGCAACTGAAGATCAACTCGC
TGCCATCGAAGAAACCGTTAGAGATGAAATGGAAAAAGCCTCTGAAAAAGCTATCGCTGC
TCCATTACCACAAGCTCGTGAACTCTTTACCAACGTTTACCTCCAAGAAGTTCCAGTAAG
AGGTGTTGAATTTGTTAACAGTTTCAAACCATAAATTAATATTAACTTTTTTTACTTATT
AAAAAAAAAAGTTTTAATTTTTAAAAAAAAAA----------TGGTCACTATGTTGCAGG
CTTAAAAGTCGATGGTATGGATGTTTTCGCCGTCAAAGAAGCTGGTAAANACGCCGCTGA
ATGGTGTAAAGCTGGTAATGGTCCAATCATTTTAGAAATGGATACCTATCGTTATGTAGG
TCACTCTATGTCTGATCCAGGTATCACTTATCGTACAANANAAGAAGTTAACCACGTTAG
ACAAACTANAGATCCAATTGAAAACATTCGTCAAATCATCTTGGACAATAAAATCGCAAC
TGAAGATCAACTCGCTGCCATCGAAGAAACCGTTAGAGATGAAATGGAAAAAGCCTCTGA
AAAAGCTATCGCTGCTCCATTACCACAAGCTCGTGAACTCTTTACCAACGTTTACCTCCA
AGAAGTTCCAGTAANAGGTGTTGAATTTGTTAACAGTTTCAAACCATAAATTAATATTAA
CTTTTTTACTTATTAAAAAAAAAAG
Length of connected seq. 975
Full length Seq ID -
Full length Seq. -
Length of full length seq. -