VSF136
Library VS
(Link to library)
Clone ID VSF136
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSF136F
(Link to Original site)
Representative DNA sequence
>VSF136 (VSF136Q) /CSM/VS/VSF1-B/VSF136Q.Seq.d/
CTAGTTCTAGATCGCGGXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
LVLDR---


Translated Amino Acid sequence (All Frames)
Frame A:
LVLDR---


Frame B:
*f*ia---


Frame C:
ssrs---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ623 (VSJ623Q) /CSM/VS/VSJ6-A/VSJ623Q.Seq.d/ 34 0.048
VSF136 (VSF136Q) /CSM/VS/VSF1-B/VSF136Q.Seq.d/ 34 0.048
SSK231 (SSK231Q) /CSM/SS/SSK2-B/SSK231Q.Seq.d/ 34 0.048
VSK261 (VSK261Q) /CSM/VS/VSK2-C/VSK261Q.Seq.d/ 32 0.19
VSJ833 (VSJ833Q) /CSM/VS/VSJ8-B/VSJ833Q.Seq.d/ 32 0.19
VSJ118 (VSJ118Q) /CSM/VS/VSJ1-A/VSJ118Q.Seq.d/ 32 0.19
VSI521 (VSI521Q) /CSM/VS/VSI5-A/VSI521Q.Seq.d/ 32 0.19
VSG554 (VSG554Q) /CSM/VS/VSG5-C/VSG554Q.Seq.d/ 32 0.19
VSG459 (VSG459Q) /CSM/VS/VSG4-C/VSG459Q.Seq.d/ 32 0.19
VSF790 (VSF790Q) /CSM/VS/VSF7-D/VSF790Q.Seq.d/ 32 0.19

own update 2004.12.25
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 108609
Number of Sequences: 25388852
Number of extensions: 108609
Number of successful extensions: 108603
Number of sequences better than 10.0: 0
length of query: 27
length of database: P,810,167,932
effective HSP length: 19
effective length of query: 8
effective length of database: P,327,779,744
effective search space: 258622237952
effective search space used: 258622237952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 8.23
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 12,376,826
protein update 2009. 7.31
PSORT -
5' end seq. ID VSF136F
5' end seq.
>VSF136F.Seq
CTAGTTCTAGATCGCGG----------
Length of 5' end seq. 17
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -