VSF127
Library VS
(Link to library)
Clone ID VSF127
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16026-1
Original site URL
Representative seq. ID VSF127P
(Link to Original site)
Representative DNA sequence
>VSF127 (VSF127Q) /CSM/VS/VSF1-B/VSF127Q.Seq.d/
CAACCTACTCTCTTAGTTGTTATTATATATACATAAATTAAATTAAATTAAATTAATATC
TTTTTTTTAAAAAAAAAAATAAAAAAATAAAAACAAATTAAAAATGGGTCCAAAAGCACC
AACCACTCCAACTAAAAAAGCAGCAGCCACCAAATCAAAACCAAAACCAAATCATCCAAC
TTATCAAGTTATGATTAGTACAGCAATTGCACATTATAAGGATAGAACTGGTTCATCTCA
ACCAGCCATTATTAAATACATTGAAGCCAATTACAATGTTGCACCAGATACTTTCAAAAC
TCAATTAAAACTTGCACTCAAACGTTTAGTTGCCAAAGGTACTCTTACAATGGTCAAAGC
CAGTTACAAATTATCAGAAGAAGGTAAAAAGGAACACCAAGCCACTCTTGGTCCAGTTGC
AAAGAAACCAAAAGCCAAGACXXXXXXXXXXACTGCCGGCTCCCACCAGCTACTCCAACC
AAAAAAGCTGCACCAAAGAAACCAGCTGCTAAAGCTGCTTCAACCTCAACCAAAACTGCC
GCTGCTAAAAAGAACTCTGCTAAAGTAACCAAAGCAGTTAGTAAGAAGCCAGCTGCTAAA
AAAGCTCCAAGTAAGAAAGTCGCTGCCAAAAAATAAGGTGATTTGTTTTNTAANAGTGNA
TTTTTTTTTTCTCTCCATCCATCTTCATTTATATTCAATTATCAAACTGTAAAAAGTTTT
TTTATT
sequence update 2001. 3.22
Translated Amino Acid sequence
nlls*lllyihkln*iklisff*kkk*KNKNKLKMGPKAPTTPTKKAAATKSKPKPNHPT
YQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVAKGTLTMVKA
SYKLSEEGKKEHQATLGPVAKKPKAK---

---CRLPPATPTKKAAPKKPAAKAASTSTKTAAAKKNSAKVTKAVSKKPAAKKAPSKKVA
AKK*gdlfxxsxfffslhpssfifnyqtvksffi


Translated Amino Acid sequence (All Frames)
Frame A:
qptllvviiyt*ikln*inifflkkkikk*kqikngskstnhsn*kssshqiktktkssn
lssyd*ysnctl*g*nwfistshy*ih*sqlqcctryfqnsiktctqtfscqrysyngqs
qlqiirrr*kgtpshswsscketksqd---

---tagshqllqpkklhqrnqllkllqpqpklpllkrtllk*pkqlvrsqllkklqvrks
lpknkvicfxxvxffflsihlhlysiikl*kvfl

Frame B:
nlls*lllyihkln*iklisff*kkk*KNKNKLKMGPKAPTTPTKKAAATKSKPKPNHPT
YQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVAKGTLTMVKA
SYKLSEEGKKEHQATLGPVAKKPKAK---

---lpaptsysnqksctketsc*scfnlnqncrc*kelc*snqss**easc*kssk*esr
cqkir*fvx*xxifffspsifiyiqlsnckkffy

Frame C:
tyslscyyiyin*ikln*ylffkkknkkiktn*kwvqkhqplqlkkqqppnqnqnqiiql
ikl*lvqqlhiirielvhlnqpllntlkpitmlhqilskln*nlhsnv*lpkvllqwskp
vtnyqkkvkrntkpllvqlqrnqkpr---

---CRLPPATPTKKAAPKKPAAKAASTSTKTAAAKKNSAKVTKAVSKKPAAKKAPSKKVA
AKK*gdlfxxsxfffslhpssfifnyqtvksffi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF127 (VSF127Q) /CSM/VS/VSF1-B/VSF127Q.Seq.d/ 1076 0.0
VSH740 (VSH740Q) /CSM/VS/VSH7-B/VSH740Q.Seq.d/ 668 0.0
SSB222 (SSB222Q) /CSM/SS/SSB2-A/SSB222Q.Seq.d/ 668 0.0
SLB856 (SLB856Q) /CSM/SL/SLB8-C/SLB856Q.Seq.d/ 668 0.0
SLK644 (SLK644Q) /CSM/SL/SLK6-B/SLK644Q.Seq.d/ 662 0.0
SLG855 (SLG855Q) /CSM/SL/SLG8-C/SLG855Q.Seq.d/ 662 0.0
SSJ583 (SSJ583Q) /CSM/SS/SSJ5-D/SSJ583Q.Seq.d/ 652 0.0
SSC264 (SSC264Q) /CSM/SS/SSC2-C/SSC264Q.Seq.d/ 648 0.0
AHJ702 (AHJ702Q) /CSM/AH/AHJ7-A/AHJ702Q.Seq.d/ 624 e-178
SSF687 (SSF687Q) /CSM/SS/SSF6-D/SSF687Q.Seq.d/ 605 e-172

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U50904|U50904.2 Dictyostelium discoideum histone H1 mRNA, complete cds. 668 0.0 5
L33457|L33457.1 Dictyostelium discoideum (clone pBSK/HMG/ECO-XHO) histone H1 gene, complete cds. 668 0.0 3
AC113201|AC113201.4 Mus musculus clone RP23-271G7, *** SEQUENCING IN PROGRESS ***, 9 ordered pieces. 56 6e-04 1
AC011463|AC011463.7 Homo sapiens chromosome 19 clone CTC-442E9, complete sequence. 56 6e-04 1
AC080015|AC080015.15 Mus musculus 7 BAC RP23-163B17 (RPCI Mouse BAC) complete sequence. 56 6e-04 1
AZ874326|AZ874326.1 2M0188I23F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0188I23 F, DNA sequence. 56 6e-04 1
AC132755|AC132755.4 Rattus norvegicus clone CH230-342M15, WORKING DRAFT SEQUENCE, 2 unordered pieces. 56 6e-04 1
AC080016|AC080016.10 Mus musculus chromosome 7 clone RP23-317H8, WORKING DRAFT SEQUENCE, 5 unordered pieces. 56 6e-04 1
AC103304|AC103304.5 Rattus norvegicus clone CH230-108I9, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces. 46 0.001 2
AC129980|AC129980.6 Homo sapiens chromosome 15, clone CTD-2529M12, complete sequence. 48 0.001 3
dna update 2003. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54671) RecName: Full=Histone H1; &L33457_1(L33457|pid:none) &... 162 1e-38
CP001574_268(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 74 4e-12
X62456_1(X62456|pid:none) A.thaliana H1-1C mRNA for histone H1-1... 72 2e-11
AF514417_1(AF514417|pid:none) Pisum sativum subsp. abyssinicum h... 69 1e-10
AF514416_1(AF514416|pid:none) Lathyrus aphaca histone H1 (His1) ... 69 1e-10
AF352246_1(AF352246|pid:none) Pisum sativum histone H1 (His1) ge... 69 1e-10
AJ635198_1(AJ635198|pid:none) Pisum sativum his5 gene for histon... 69 1e-10
AJ635199_1(AJ635199|pid:none) Pisum sativum his5 gene for histon... 69 2e-10
AF352249_1(AF352249|pid:none) Lathyrus sativus histone H1 (His1)... 69 2e-10
AB021872_1(AB021872|pid:none) Pisum sativum mRNA for ribosome-se... 68 3e-10
protein update 2009. 7.31
PSORT

psg: 0.62 gvh: 0.30 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.09
nuc: 0.25 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for VSF127 is nuc

5' end seq. ID VSF127F
5' end seq.
>VSF127F.Seq
CAACCTACTCTCTTAGTTGTTATTATATATACATAAATTAAATTAAATTAAATTAATATC
TTTTTTTTAAAAAAAAAAATAAAAAAATAAAAACAAATTAAAAATGGGTCCAAAAGCACC
AACCACTCCAACTAAAAAAGCAGCAGCCACCAAATCAAAACCAAAACCAAATCATCCAAC
TTATCAAGTTATGATTAGTACAGCAATTGCACATTATAAGGATAGAACTGGTTCATCTCA
ACCAGCCATTATTAAATACATTGAAGCCAATTACAATGTTGCACCAGATACTTTCAAAAC
TCAATTAAAACTTGCACTCAAACGTTTAGTTGCCAAAGGTACTCTTACAATGGTCAAAGC
CAGTTACAAATTATCAGAAGAAGGTAAAAAGGAACACCAAGCCACTCTTGGTCCAGTTGC
AAAGAAACCAAAAGCCAAGAC----------
Length of 5' end seq. 441
3' end seq. ID VSF127Z
3' end seq.
>VSF127Z.Seq
----------ACTGCCGGCTCCCACCAGCTACTCCAACCAAAAAAGCTGCACCAAAGAAA
CCAGCTGCTAAAGCTGCTTCAACCTCAACCAAAACTGCCGCTGCTAAAAAGAACTCTGCT
AAAGTAACCAAAGCAGTTAGTAAGAAGCCAGCTGCTAAAAAAGCTCCAAGTAAGAAAGTC
GCTGCCAAAAAATAAGGTGATTTGTTTTNTAANAGTGNATTTTTTTTTTCTCTCCATCCA
TCTTCATTTATATTCAATTATCAAACTGTAAAAAGTTTTTTTATT
Length of 3' end seq. 275
Connected seq. ID VSF127P
Connected seq.
>VSF127P.Seq
CAACCTACTCTCTTAGTTGTTATTATATATACATAAATTAAATTAAATTAAATTAATATC
TTTTTTTTAAAAAAAAAAATAAAAAAATAAAAACAAATTAAAAATGGGTCCAAAAGCACC
AACCACTCCAACTAAAAAAGCAGCAGCCACCAAATCAAAACCAAAACCAAATCATCCAAC
TTATCAAGTTATGATTAGTACAGCAATTGCACATTATAAGGATAGAACTGGTTCATCTCA
ACCAGCCATTATTAAATACATTGAAGCCAATTACAATGTTGCACCAGATACTTTCAAAAC
TCAATTAAAACTTGCACTCAAACGTTTAGTTGCCAAAGGTACTCTTACAATGGTCAAAGC
CAGTTACAAATTATCAGAAGAAGGTAAAAAGGAACACCAAGCCACTCTTGGTCCAGTTGC
AAAGAAACCAAAAGCCAAGAC----------ACTGCCGGCTCCCACCAGCTACTCCAACC
AAAAAAGCTGCACCAAAGAAACCAGCTGCTAAAGCTGCTTCAACCTCAACCAAAACTGCC
GCTGCTAAAAAGAACTCTGCTAAAGTAACCAAAGCAGTTAGTAAGAAGCCAGCTGCTAAA
AAAGCTCCAAGTAAGAAAGTCGCTGCCAAAAAATAAGGTGATTTGTTTTNTAANAGTGNA
TTTTTTTTTTCTCTCCATCCATCTTCATTTATATTCAATTATCAAACTGTAAAAAGTTTT
TTTATT
Length of connected seq. 716
Full length Seq ID -
Full length Seq. -
Length of full length seq. -