VSF120
Library VS
(Link to library)
Clone ID VSF120
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12223-1
Original site URL
Representative seq. ID VSF120E
(Link to Original site)
Representative DNA sequence
>VSF120 (VSF120Q) /CSM/VS/VSF1-A/VSF120Q.Seq.d/
TGTTTACAATAAATTAGATAAATTATTTGGTGGTCAAAATGCAAAGATCTTTTTAAAGGT
ATTGGCATTGTTAGTGATCATTGTATTTTGTGATTCAATTGTAAATTCATATAATATCAA
CAAGAAATTACATACACCAGAATTGACCGGAGCTAAATTTGACAGACAAAATGAATATAC
CCGTATGTTTAGATATCAAAGAAATTCATACATTTGTGGTTTCTGTCTCTATTTATTCTT
TTTAATCTATCGTTCACAAGGTATCATTAGTCAATTATCAAATGTAGAAGCCTCAAAAAC
TGCCATTGAAAAGCAAACTAAAAATAATTTAAATACCGTCGAAACTCTCTTATCGGAAAA
TGAAAAATTAAAAACTGAAATTAAAGACCTTAAAAAGATGGAAAAAGAACATAAAGCTAT
GAAATCTCAAGCTGAAAATACAACCAAAGAATATCTTAAACTCCAAGAAGAATATAATCA
ACTTTTAGGTAAAAAACCAAAAACTCAAAAGAAAGATGATTAATCATCTTAAAAATAATA
ATAATAATAATTAATTCATTATTATTATTATTATTATCATTATCATCATCAGATTTNAAT
TTATAAAAAAAAATAAATAAAAAAAAAAAAACTTATTATTATTTTTTACT
sequence update 2001. 3.23
Translated Amino Acid sequence
VYNKLDKLFGGQNAKIFLKVLALLVIIVFCDSIVNSYNINKKLHTPELTGAKFDRQNEYT
RMFRYQRNSYICGFCLYLFFLIYRSQGIISQLSNVEASKTAIEKQTKNNLNTVETLLSEN
EKLKTEIKDLKKMEKEHKAMKSQAENTTKEYLKLQEEYNQLLGKKPKTQKKDD*ss*k**
***lihyyyyyyhyhhqixiykkk*ikkkkliiify


Translated Amino Acid sequence (All Frames)
Frame A:
clq*ir*iiwwskckdlfkgigivsdhcil*fnckfi*yqqeitytridrs*i*qtk*iy
pyv*iskkfihlwflslfilfnlsftryh*siikcrslknch*kan*k*fkyrrnsligk
*kikn*n*rp*kdgkrt*syeiss*kynqris*tprri*stfr*ktknsker*liilkii
iiiinsllllllslsssdxnl*kkinkkkktyyyfl


Frame B:
VYNKLDKLFGGQNAKIFLKVLALLVIIVFCDSIVNSYNINKKLHTPELTGAKFDRQNEYT
RMFRYQRNSYICGFCLYLFFLIYRSQGIISQLSNVEASKTAIEKQTKNNLNTVETLLSEN
EKLKTEIKDLKKMEKEHKAMKSQAENTTKEYLKLQEEYNQLLGKKPKTQKKDD*ss*k**
***lihyyyyyyhyhhqixiykkk*ikkkkliiify


Frame C:
ftin*inylvvkmqrsf*rywhc**slyfviql*ihiistrnyihqn*pelnltdkmnip
vcldikeihtfvvsvsiysf*sivhkvslvnyqm*kpqklplksklkii*ipsklsyrkm
kn*klklktlkrwkknikl*nlklkiqpknilnskkniinf*vknqklkrkminhlknnn
nnn*fiiiiiiiiiiirfxfikknk*kkknlllfft


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF120 (VSF120Q) /CSM/VS/VSF1-A/VSF120Q.Seq.d/ 702 0.0
SSI190 (SSI190Q) /CSM/SS/SSI1-D/SSI190Q.Seq.d/ 702 0.0
VSB721 (VSB721Q) /CSM/VS/VSB7-A/VSB721Q.Seq.d/ 668 0.0
VSA222 (VSA222Q) /CSM/VS/VSA2-A/VSA222Q.Seq.d/ 617 e-176
SSK705 (SSK705Q) /CSM/SS/SSK7-A/SSK705Q.Seq.d/ 521 e-147
SSE426 (SSE426Q) /CSM/SS/SSE4-B/SSE426Q.Seq.d/ 432 e-120
SLJ523 (SLJ523Q) /CSM/SL/SLJ5-A/SLJ523Q.Seq.d/ 430 e-119
SLH256 (SLH256Q) /CSM/SL/SLH2-C/SLH256Q.Seq.d/ 430 e-119
SSH311 (SSH311Q) /CSM/SS/SSH3-A/SSH311Q.Seq.d/ 373 e-102
VSB322 (VSB322Q) /CSM/VS/VSB3-A/VSB322Q.Seq.d/ 214 1e-54

own update 2001. 3.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL392110|AL392110.12 Human DNA sequence from clone RP11-29M23 on chromosome 9. 36 0.026 5
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5. 36 0.041 9
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 36 0.051 6
AC021236|AC021236.10 Homo sapiens chromosome 8, clone RP11-113H14, complete sequence. 40 0.28 3
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence. 36 0.32 7
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence. 36 0.33 7
Z82975|Z82975.1 Human DNA sequence from clone RP1-36J3 on chromosome X Contains genomic marker DXS1192, CA repeat, STSs, GSSs and a CpG Island. 40 0.38 4
AC096560|AC096560.1 Homo sapiens BAC clone RP11-241F6 from 2, complete sequence. 44 0.56 3
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 40 0.58 4
AC026550|AC026550.2 Homo sapiens chromosome 4 clone RP11-672L15 map 4, WORKING DRAFT SEQUENCE, 15 unordered pieces. 34 0.63 4
dna update 2003. 9.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54K74) RecName: Full=Endoplasmic reticulum transmembrane prote... 324 2e-87
BT080943_1(BT080943|pid:none) Caligus clemensi clone ccle-evs-51... 80 5e-14
BT078760_1(BT078760|pid:none) Lepeophtheirus salmonis Pacific fo... 78 2e-13
BT076915_1(BT076915|pid:none) Caligus rogercresseyi clone crog-e... 75 2e-12
BT077060_1(BT077060|pid:none) Caligus rogercresseyi clone crog-e... 72 2e-11
BT075195_1(BT075195|pid:none) Osmerus mordax clone omor-rgc-513-... 70 5e-11
BT075164_1(BT075164|pid:none) Osmerus mordax clone omor-rgc-508-... 70 5e-11
BC079182_1(BC079182|pid:none) Rattus norvegicus B-cell receptor-... 70 5e-11
CP000498_657(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 70 7e-11
AK008043_1(AK008043|pid:none) Mus musculus adult male small inte... 69 1e-10
protein update 2009. 7.31
PSORT

psg: 0.68 gvh: 0.66 alm: 0.19 top: 0.50 tms: 0.07 mit: 0.17 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.36 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: endoplasmic reticulum
12.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for VSF120 is cyt

5' end seq. ID VSF120F
5' end seq.
>VSF120F.Seq
TGTTTACAATAAATTAGATAAATTATTTGGTGGTCAAAATGCAAAGATCTTTTTAAAGGT
ATTGGCATTGTTAGTGATCATTGTATTTTGTGATTCAATTGTAAATTCATATAATATCAA
CAAGAAATTACATACACCAGAATTGACCGGAGCTAAATTTGACAGACAAAATGAATATAC
CCGTATGTTTAGATATCAAAGAAATTCATACATTTGTGGTTTCTGTCTCTATTTATTCTT
TTTAATCTATCGTTCACAAGGTATCATTAGTCAATTATCAAATGTAGAAGCCTCAAAAAC
TGCCATTGAAAAGCAAACTAAAAATAATTTAAATACCGTCGAAACTCTCTTATCGGAAAA
TGAAAAATTAAAAACTGAAATTAAAGACCTTAAAAAGATGGAAAAAGAACATAAAGCTAT
GAAATCTCAAGCTGAAAATACAACCAAAGAATATCTTAAACTCCAAGAAGAATATAATCA
ACTTTTAGGTAAAAAACCAAAAACTCAAAAGAAAGATGATTAATCATCTTAAAAATAATA
ATAATAATAATTAATTCATTATTATTATTATTATTATCATTATCATCATCAGATTTAAAT
TTATAAAAAAAAATAAATAAAAAAAAAA----------
Length of 5' end seq. 628
3' end seq. ID VSF120Z
3' end seq.
>VSF120Z.Seq
----------CNGATTTTAATTTATAAAAAAAAATAAATAAAAAAAAAAAAACTTATTAT
TATTTTTTACT
Length of 3' end seq. 61
Connected seq. ID VSF120P
Connected seq.
>VSF120P.Seq
TGTTTACAATAAATTAGATAAATTATTTGGTGGTCAAAATGCAAAGATCTTTTTAAAGGT
ATTGGCATTGTTAGTGATCATTGTATTTTGTGATTCAATTGTAAATTCATATAATATCAA
CAAGAAATTACATACACCAGAATTGACCGGAGCTAAATTTGACAGACAAAATGAATATAC
CCGTATGTTTAGATATCAAAGAAATTCATACATTTGTGGTTTCTGTCTCTATTTATTCTT
TTTAATCTATCGTTCACAAGGTATCATTAGTCAATTATCAAATGTAGAAGCCTCAAAAAC
TGCCATTGAAAAGCAAACTAAAAATAATTTAAATACCGTCGAAACTCTCTTATCGGAAAA
TGAAAAATTAAAAACTGAAATTAAAGACCTTAAAAAGATGGAAAAAGAACATAAAGCTAT
GAAATCTCAAGCTGAAAATACAACCAAAGAATATCTTAAACTCCAAGAAGAATATAATCA
ACTTTTAGGTAAAAAACCAAAAACTCAAAAGAAAGATGATTAATCATCTTAAAAATAATA
ATAATAATAATTAATTCATTATTATTATTATTATTATCATTATCATCATCAGATTTAAAT
TTATAAAAAAAAATAAATAAAAAAAAAA----------CNGATTTTAATTTATAAAAAAA
AATAAATAAAAAAAAAAAAACTTATTATTATTTTTTACT
Length of connected seq. 689
Full length Seq ID VSF120E
Full length Seq.
>VSF120E.Seq
TGTTTACAATAAATTAGATAAATTATTTGGTGGTCAAAATGCAAAGATCTTTTTAAAGGT
ATTGGCATTGTTAGTGATCATTGTATTTTGTGATTCAATTGTAAATTCATATAATATCAA
CAAGAAATTACATACACCAGAATTGACCGGAGCTAAATTTGACAGACAAAATGAATATAC
CCGTATGTTTAGATATCAAAGAAATTCATACATTTGTGGTTTCTGTCTCTATTTATTCTT
TTTAATCTATCGTTCACAAGGTATCATTAGTCAATTATCAAATGTAGAAGCCTCAAAAAC
TGCCATTGAAAAGCAAACTAAAAATAATTTAAATACCGTCGAAACTCTCTTATCGGAAAA
TGAAAAATTAAAAACTGAAATTAAAGACCTTAAAAAGATGGAAAAAGAACATAAAGCTAT
GAAATCTCAAGCTGAAAATACAACCAAAGAATATCTTAAACTCCAAGAAGAATATAATCA
ACTTTTAGGTAAAAAACCAAAAACTCAAAAGAAAGATGATTAATCATCTTAAAAATAATA
ATAATAATAATTAATTCATTATTATTATTATTATTATCATTATCATCATCAGATTTNAAT
TTATAAAAAAAAATAAATAAAAAAAAAAAAACTTATTATTATTTTTTACT
Length of full length seq. 650