>VSE812 (VSE812Q) /CSM/VS/VSE8-A/VSE812Q.Seq.d/
AAATTACAAAAGAAATGGGCTGATAAAAATAGTAGTACTTAAAAATCATAGATTCCTATT
CAAAAAGAAAGAATGAAGAATTCACCAGTAAACAATTCAAAAGCAGGTAATGGTACATCG
ATCTATGATAAAGAAGCAAATATCACTCAAATCGATTTGAATGCATCTTATAAAACTCAT
CAAAAACAAAATTCTGCTGCAACCTCTGCAATGAATGAAGAGAAATTTAAACAATTGATT
ATAAACATTATGGAATTATATTCATCAAAAGTTGAACAATTATTTTTCGATCAAAATCAA
GAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAA
GACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCAATACGG
TATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGC
CTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCAC
TCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGA
TAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAAT
TAGATTTCAGAGAGTTATCAAACATAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

nykrnglikivvlknhrflfkkke*rihq*tiqkqvmvhrsmikkqislksi*mhlikli
knkillqplq*mkrnlnn*l*TLWNYIHQKLNNYFSIKIKKIYRIGQAQPEDGKQISTGK
TEFDLTEKTINPMGGFAQYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKIT
LKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikhnikkkkkkkkkk

Frame A:
klqkkwadknsst*ks*ipiqkermknspvnnskagngtsiydkeanitqidlnasykth
qkqnsaatsamneekfkqliinimelysskveqlffdqnqedlqnrssstrrr*tnlnr*
d*irfn*kdyqsngwfrsiryg*t*ilna*rlccwskkeslnlkkeyhhsnwsccprenh
sqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*isesyqt*ykkkkkkkkkk


Frame B:
nykrnglikivvlknhrflfkkke*rihq*tiqkqvmvhrsmikkqislksi*mhlikli
knkillqplq*mkrnlnn*l*TLWNYIHQKLNNYFSIKIKKIYRIGQAQPEDGKQISTGK
TEFDLTEKTINPMGGFAQYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKIT
LKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikhnikkkkkkkkkk


Frame C:
itkemg**k**ylkiidsyskrkneeftskqfksr*wyidl**rskyhsnrfecil*nss
ktkfccnlcne*rei*tidykhygiifiks*tiifrsksrrftesvklnqktvnksqpvr
lnsi*lkrlsiqwvvslntvwlnmns*clkvvllvqerep*p*ervsplklvvlpsrksl
snssippaslvtvfikplkirlnisasrnqdqlrlkfnkldfrelsnii*kkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE812 (VSE812Q) /CSM/VS/VSE8-A/VSE812Q.Seq.d/                       1368   0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                        771   0.0
VFF813 (VFF813Q) /CSM/VF/VFF8-A/VFF813Q.Seq.d/                        771   0.0
SLI469 (SLI469Q) /CSM/SL/SLI4-C/SLI469Q.Seq.d/                        771   0.0
SLI430 (SLI430Q) /CSM/SL/SLI4-B/SLI430Q.Seq.d/                        771   0.0
SLH735 (SLH735Q) /CSM/SL/SLH7-B/SLH735Q.Seq.d/                        771   0.0
SLH105 (SLH105Q) /CSM/SL/SLH1-A/SLH105Q.Seq.d/                        771   0.0
SLE181 (SLE181Q) /CSM/SL/SLE1-D/SLE181Q.Seq.d/                        771   0.0
SLC344 (SLC344Q) /CSM/SL/SLC3-B/SLC344Q.Seq.d/                        771   0.0
SLB430 (SLB430Q) /CSM/SL/SLB4-B/SLB430Q.Seq.d/                        771   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.   476  0.0  2
BQ590105|BQ590105.1 E012844-024-019-M20-T7 MPIZ-ADIS-024-storage root Beta vulgaris cDNA clone 024-019-M20 3-PRIME, mRNA sequence.    46  5e-04  2
BE776610|BE776610.1 MY-18-B-10 PinfestansMY Phytophthora infestans cDNA, mRNA sequence.    52  0.010  1
BI379783|BI379783.1 BFLG1_001414 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498G23118 5', mRNA sequence.    52  0.010  1
CC107699|CC107699.1 NDL.31F22.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.31F22, DNA sequence.    52  0.010  1
BI378720|BI378720.1 BFLG1_000351 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498A10114 5', mRNA sequence.    52  0.010  1
BI379782|BI379782.1 BFLG1_001413 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498A10114 5', mRNA sequence.    52  0.010  1
BI323814|BI323814.1 kt45b05.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL3_TOXCA P49149 60S RIBOSOMAL PROTEIN L3. ;, mRNA sequence.    50  0.038  1
BI323825|BI323825.1 kt45c07.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL3_TOXCA P49149 60S RIBOSOMAL PROTEIN L3. ;, mRNA sequence.    50  0.038  1
AC122176|AC122176.2 Homo sapiens chromosome 3 clone RP11-294O18, complete sequence.    36  0.091  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   232   1e-59
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   137   4e-31
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   136   6e-31
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   134   2e-30
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ...   134   4e-30
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot...   133   5e-30
AM980946_1(AM980946|pid:none) Brachionus plicatilis partial mRNA...   133   5e-30
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   133   5e-30
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei...   132   1e-29
AF401554_1(AF401554|pid:none) Ictalurus punctatus ribosomal prot...   132   1e-29

 psg: 0.66  gvh: 0.35  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.05
 nuc: 0.09  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for VSE812 is nuc

>VSE812E.Seq
AAATTACAAAAGAAATGGGCTGATAAAAATAGTAGTACTTAAAAATCATAGATTCCTATT
CAAAAAGAAAGAATGAAGAATTCACCAGTAAACAATTCAAAAGCAGGTAATGGTACATCG
ATCTATGATAAAGAAGCAAATATCACTCAAATCGATTTGAATGCATCTTATAAAACTCAT
CAAAAACAAAATTCTGCTGCAACCTCTGCAATGAATGAAGAGAAATTTAAACAATTGATT
ATAAACATTATGGAATTATATTCATCAAAAGTTGAACAATTATTTTTCGATCAAAATCAA
GAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAA
GACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCAATACGG
TATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGC
CTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCAC
TCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGA
TAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAAT
TAGATTTCAGAGAGTTATCAAACATAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A