>VSE785 (VSE785Q) /CSM/VS/VSE7-D/VSE785Q.Seq.d/
CCTTTATACATTTTAAAAGGAAAAAAATGGACTATAAGTCAATATATTTATTTAAACACA
GTGAATTATGTTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAACCAATAAAATA
AAAAGTTCAACAATACTCAATCAATTATTGGTAAAAAGTTTGGATAGCAAACCATAGATT
CAATTCAAGTTAATTTTTGAAATTAAAAATACAAGAAAAAAAAAATAATAAATAAAAAAA
AATAAAGTAAAAGTCAAAATCCAATTATTGGTAAAATTCATATTAGTTGACAGAAGAATT
GGCAAAAATAAAAAAGTTATGTAAATATCTGGCAACTGAAACTTTTGCAATTATCCAATC
CAGTCAGTTAAACCCAAAGATAGGAAAAAAAAAAAAAAAAAATAATA

lytf*kekngl*vnifi*tq*imfrkkkkkkkkkn*pik*kvqqysinyw*kvwianhrf
nss*flklkiqekknnk*kkik*ksksnyw*nsy*LTEELAKIKKLCKYLATETFAIIQS
SQLNPKIGKKKKKNN

Frame A:
plyilkgkkwtisqyiylntvnyv*ekkkkkkkkkltnkiksstilnqllvksldskp*i
qfklifeikntrkkk**ikknkvkvkiqllvkfilvdrrigknkkvm*isgn*nfcnypi
qsvkpkdrkkkkkk*


Frame B:
lytf*kekngl*vnifi*tq*imfrkkkkkkkkkn*pik*kvqqysinyw*kvwianhrf
nss*flklkiqekknnk*kkik*ksksnyw*nsy*LTEELAKIKKLCKYLATETFAIIQS
SQLNPKIGKKKKKNN


Frame C:
fihfkrkkmdyksiylfkhselclgkkkkkkkkkinq*nkkfnntqsiigkkfg*qtids
iqvnf*n*kykkkkiinkkk*sksqnpiigkihis*qknwqk*ksyvniwqlkllqlsnp
vs*tqr*ekkkkkii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE785 (VSE785Q) /CSM/VS/VSE7-D/VSE785Q.Seq.d/                        210   1e-53
VSB285 (VSB285Q) /CSM/VS/VSB2-D/VSB285Q.Seq.d/                         34   1.6
VHE826 (VHE826Q) /CSM/VH/VHE8-B/VHE826Q.Seq.d/                         34   1.6
SSM801 (SSM801Q) /CSM/SS/SSM8-A/SSM801Q.Seq.d/                         34   1.6
SSI424 (SSI424Q) /CSM/SS/SSI4-A/SSI424Q.Seq.d/                         34   1.6
SSH826 (SSH826Q) /CSM/SS/SSH8-B/SSH826Q.Seq.d/                         34   1.6
SHJ535 (SHJ535Q) /CSM/SH/SHJ5-B/SHJ535Q.Seq.d/                         34   1.6
SFI248 (SFI248Q) /CSM/SF/SFI2-B/SFI248Q.Seq.d/                         34   1.6
FC-BJ24 (FC-BJ24Q) /CSM/FC/FC-BJ/FC-BJ24Q.Seq.d/                       34   1.6
AFC473 (AFC473Q) /CSM/AF/AFC4-D/AFC473Q.Seq.d/                         34   1.6

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BE069081|BE069081.1 QV3-BT0379-140100-058-f07 BT0379 Homo sapiens cDNA, mRNA sequence.    46  0.033  2
BX088526|BX088526.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  0.33  3
AL773558|AL773558.13 Zebrafish DNA sequence from clone CH211-207M11.    40  0.57  8
AX348976|AX348976.1 Sequence 434 from Patent WO0202807.           32  0.81  4
AL929521|AL929521.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-67F10.    40  0.86  5
CB232781|CB232781.1 AGENCOURT_11445317 NIH_MGC_166 Mus musculus cDNA clone IMAGE:30246269 5', mRNA sequence.    42  0.86  2
AF023295|AF023295.1 Venezuelan equine encephalitis virus Mucambo BeAn 8 3'UTR.    44  1.3  1
U82699|U82699.1 Venezuelan equine encephalitis virus structural protein precursor mRNA, complete cds.    44  1.3  1
AF075253|AF075253.1 Venezuelan equine encephalitis virus strain Mucambo BeAn 8, complete genome.    44  1.3  1
AC100770|AC100770.2 Homo sapiens chromosome 11, clone RP11-46P12, complete sequence.    44  1.3  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 449,893,490

 psg: 0.68  gvh: 0.39  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSE785 is nuc

>VSE785E.Seq
CCTTTATACATTTTAAAAGGAAAAAAATGGACTATAAGTCAATATATTTATTTAAACACA
GTGAATTATGTTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAACCAATAAAATA
AAAAGTTCAACAATACTCAATCAATTATTGGTAAAAAGTTTGGATAGCAAACCATAGATT
CAATTCAAGTTAATTTTTGAAATTAAAAATACAAGAAAAAAAAAATAATAAATAAAAAAA
AATAAAGTAAAAGTCAAAATCCAATTATTGGTAAAATTCATATTAGTTGACAGAAGAATT
GGCAAAAATAAAAAAGTTATGTAAATATCTGGCAACTGAAACTTTTGCAATTATCCAATC
CAGTCAGTTAAACCCAAAGATAGGAAAAAAAAAAAAAAAAAATAATA