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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSE581
Library VS
(Link to library)
Clone ID VSE581
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10011-1
Original site URL
Representative seq. ID VSE581E
(Link to Original site)
Representative DNA sequence 
>VSE581 (VSE581Q) /CSM/VS/VSE5-D/VSE581Q.Seq.d/
GAACTGCACTATCCATTTTACGTTACTTCATCTCTGATTTAATTCAAGCAACTTATGATG
AATGTATAGATTTATTCAATAAATTACCTCAAAGAAAAATTTTTGAAGATAAATTATTTG
AAGAAATTCAGTCAATAGTTTTAGACCAAAGAAAATTTGATAAATTATTAGAAAAATAAA
TTTAATTTAAAAAAAAAAAAAAAAATAATAAAAAAAAAAAAATATATATATATTTATGTA
TAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
sequence update 2000. 8.25
Translated Amino Acid sequence 
TALSILRYFISDLIQATYDECIDLFNKLPQRKIFEDKLFEEIQSIVLDQRKFDKLLEK*i
*fkkkkknnkkkkiyiylcinkkkkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
elhypfyvtssli*fkqlmmnv*iysinylkekflkinylkkfsq*f*tkenliny*knk
fnlkkkkkiikkkkyiyiyv*ikkkkkkkkkkkkkkkkkkkkkk


Frame B:
nctihftllhl*fnssnl**myrfiq*itskknf*r*ii*rnsvnsfrpkki**iirkin
li*kkkkk**kkkniyifmyk*kkkkkkkkkkkkkkkkkkkkk


Frame C:
TALSILRYFISDLIQATYDECIDLFNKLPQRKIFEDKLFEEIQSIVLDQRKFDKLLEK*i
*fkkkkknnkkkkiyiylcinkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE581 (VSE581Q) /CSM/VS/VSE5-D/VSE581Q.Seq.d/                        373   e-102
SLE119 (SLE119Q) /CSM/SL/SLE1-A/SLE119Q.Seq.d/                        335   2e-91
AFJ721 (AFJ721Q) /CSM/AF/AFJ7-A/AFJ721Q.Seq.d/                        127   1e-28
VFM555 (VFM555Q) /CSM/VF/VFM5-C/VFM555Q.Seq.d/                         86   4e-16
AFD341 (AFD341Q) /CSM/AF/AFD3-B/AFD341Q.Seq.d/                         40   0.019
VSF708 (VSF708Q) /CSM/VS/VSF7-A/VSF708Q.Seq.d/                         38   0.076
VHG864 (VHG864Q) /CSM/VH/VHG8-C/VHG864Q.Seq.d/                         36   0.30
SSK623 (SSK623Q) /CSM/SS/SSK6-A/SSK623Q.Seq.d/                         36   0.30
SSE886 (SSE886Q) /CSM/SS/SSE8-D/SSE886Q.Seq.d/                         36   0.30
SSC479 (SSC479Q) /CSM/SS/SSC4-D/SSC479Q.Seq.d/                         36   0.30
own update 2004. 6. 2
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U81500|U81500.1 Dictyostelium discoideum drainin gene, exons 1 and 2 and complete cds.   341  3e-90  1
BF296653|BF296653.1 040PbA09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    38  0.002  2
AE001579|AE001579.1 Borrelia burgdorferi plasmid cp32-7, complete plasmid sequence.    42  0.007  3
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2.    34  0.009  7
AF044866|AF044866.1 Phoebis sennae large subunit ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and small subunit ribosomal RNA gene, partial sequence, mitochondrial genes for mitochondrial RNAs.    50  0.016  1
BM169505|BM169505.1 EST572028 PyBS Plasmodium yoelii yoelii cDNA clone PYCPR88 5' end, mRNA sequence.    36  0.027  2
BM160792|BM160792.1 EST563315 PyBS Plasmodium yoelii yoelii cDNA clone PYCJW04 5' end, mRNA sequence.    36  0.032  2
BM161388|BM161388.1 EST563911 PyBS Plasmodium yoelii yoelii cDNA clone PYCKE23 5' end, mRNA sequence.    36  0.033  2
AC123434|AC123434.3 Rattus norvegicus clone CH230-449B17, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  0.099  4
BF296468|BF296468.1 037PbE06 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    38  0.11  2
dna update 2003. 8.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000111_1010(CP000111|pid:none) Prochlorococcus marinus str. MI...    35   1.1
CP000721_1607(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    32   9.2
FM992689_431(FM992689|pid:none) Candida dubliniensis CD36 chromo...    32   9.2
protein update 2009. 3.21
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSE581 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSE581E
Full length Seq. 
>VSE581E.Seq
GAACTGCACTATCCATTTTACGTTACTTCATCTCTGATTTAATTCAAGCAACTTATGATG
AATGTATAGATTTATTCAATAAATTACCTCAAAGAAAAATTTTTGAAGATAAATTATTTG
AAGAAATTCAGTCAATAGTTTTAGACCAAAGAAAATTTGATAAATTATTAGAAAAATAAA
TTTAATTTAAAAAAAAAAAAAAAAATAATAAAAAAAAAAAAATATATATATATTTATGTA
TAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
Length of full length seq. 312