NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSE557
Library VS
(Link to library)
Clone ID VSE557
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09949-1
Original site URL
Representative seq. ID VSE557Z
(Link to Original site)
Representative DNA sequence 
>VSE557 (VSE557Q) /CSM/VS/VSE5-C/VSE557Q.Seq.d/
XXXXXXXXXXATGCCAACATTGGCCAGTAATTTCATTCCAAAGGGTATTAGAATCGAATT
ACAATCAGAGAATGGCTTATTAGGTATGGGTCCATTCCCAAAAATGGGCGAACATGATGC
CGATTTAATCAATGCAGGTAAGGAAACCGTTACAACCATTCCAGGTTCTTCCATTTTCTC
AAGTGCTGATTCATTCGCAATGATTCGTGGTGGTCATGTTGATTTAACAATTCTTGGTGG
TATGCAAGTTAGTGGTAATGGTGATTTGGCCAATTGGGTCATTCCTGGCTCAATGGTTAA
AGGTCCAGGTGGTGCTATGGATTTAACTTCAAGTGGTTCACGTGTAGTTGTCATAATGGA
ACATACCACAAAACATGGAAAACCAAAGATTTTAAAGAATTGTACACTTCCACTCACTGG
TAAATCTTGTGTAAATAGAATCATCACTGAATTGGCAGTTTTCGATGTCGTCAATGGTAA
ATTAGAATTAATTGAAGTCGTTGATGGCCAAACAGTTGATGATATTAAATCTAAAACTGA
AGCAGAATTTACTGTTTCAAAAAATTTAAAACCATTACAACAAGTTGAAATTTAAAATAA
TAATAATAATAATAATAAAAATATCAACATTTCCTAAAAT
sequence update 2000. 8.25
Translated Amino Acid sequence 
---PTLASNFIPKGIRIELQSENGLLGMGPFPKMGEHDADLINAGKETVTTIPGSSIFSS
ADSFAMIRGGHVDLTILGGMQVSGNGDLANWVIPGSMVKGPGGAMDLTSSGSRVVVIMEH
TTKHGKPKILKNCTLPLTGKSCVNRIITELAVFDVVNGKLELIEVVDGQTVDDIKSKTEA
EFTVSKNLKPLQQVEI*nnnnnnnkninis*n
Translated Amino Acid sequence (All Frames) 
Frame A:
---cqhwpvisfqrvlesnynqrmay*vwvhsqkwanmmpi*smqvrkplqpfqvlpfsq
vlihsq*fvvvmli*qflvvcklvvmviwpigsflaqwlkvqvvlwi*lqvvhv*ls*wn
ipqnmenqrf*rivhfhslvnlv*iesslnwqfsmssmvn*n*lkslmakqlmilnlklk
qnllfqki*nhynklkfkiiiiiiikistfpk


Frame B:
---anigq*fhskgy*nritirewlirygsipkngrt*crfnqcr*gnrynhsrffhflk
c*firndswwsc*fnnswwyas*w*w*fgqlghswlng*rsrwcygfnfkwftcschngt
yhktwktkdfkelytsthw*ilck*nhh*igsfrcrqw*irin*sr*wpns**y*i*n*s
riycfkkfktitts*nlk*******kyqhflk


Frame C:
---PTLASNFIPKGIRIELQSENGLLGMGPFPKMGEHDADLINAGKETVTTIPGSSIFSS
ADSFAMIRGGHVDLTILGGMQVSGNGDLANWVIPGSMVKGPGGAMDLTSSGSRVVVIMEH
TTKHGKPKILKNCTLPLTGKSCVNRIITELAVFDVVNGKLELIEVVDGQTVDDIKSKTEA
EFTVSKNLKPLQQVEI*nnnnnnnkninis*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE557 (VSE557Q) /CSM/VS/VSE5-C/VSE557Q.Seq.d/                       1154   0.0
VFJ203 (VFJ203Q) /CSM/VF/VFJ2-A/VFJ203Q.Seq.d/                       1154   0.0
CFF695 (CFF695Q) /CSM/CF/CFF6-D/CFF695Q.Seq.d/                       1154   0.0
SLH304 (SLH304Q) /CSM/SL/SLH3-A/SLH304Q.Seq.d/                       1146   0.0
VFM456 (VFM456Q) /CSM/VF/VFM4-C/VFM456Q.Seq.d/                       1142   0.0
AFK785 (AFK785Q) /CSM/AF/AFK7-D/AFK785Q.Seq.d/                       1142   0.0
AFE843 (AFE843Q) /CSM/AF/AFE8-B/AFE843Q.Seq.d/                       1140   0.0
SLE479 (SLE479Q) /CSM/SL/SLE4-D/SLE479Q.Seq.d/                       1136   0.0
VFG118 (VFG118Q) /CSM/VF/VFG1-A/VFG118Q.Seq.d/                       1134   0.0
VFO838 (VFO838Q) /CSM/VF/VFO8-B/VFO838Q.Seq.d/                       1104   0.0
own update 2001.11.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX067431|AX067431.1 Sequence 6 from Patent WO0078968.             50  1e-06  4
CB405393|CB405393.1 OSTR041C6_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    42  0.007  2
AU211936|AU211936.1 Caenorhabditis elegans cDNA clone:yk778f02 : 3' end, single read.    42  0.007  2
AU214842|AU214842.1 Caenorhabditis elegans cDNA clone:yk818b02 : 3' end, single read.    42  0.009  2
BU460859|BU460859.1 603775225F1 CSEQRBN19 Gallus gallus cDNA clone ChEST715a7 5', mRNA sequence.    40  0.009  3
BJ136646|BJ136646.1 Caenorhabditis elegans cDNA clone:yk1115d08 : 3' end, single read.    42  0.009  2
AU218483|AU218483.1 Caenorhabditis elegans cDNA clone:yk865b02 : 3' end, single read.    42  0.009  2
AU212598|AU212598.1 Caenorhabditis elegans cDNA clone:yk787d05 : 3' end, single read.    42  0.009  2
BJ134371|BJ134371.1 Caenorhabditis elegans cDNA clone:yk1087g09 : 3' end, single read.    42  0.009  2
BJ142949|BJ142949.1 Caenorhabditis elegans cDNA clone:yk1190c06 : 3' end, single read.    42  0.009  2
dna update 2003. 8.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JD9) RecName: Full=Probable succinyl-CoA:3-ketoacid-coenzyme...   384   e-105
(P42316) RecName: Full=Probable succinyl-CoA:3-ketoacid-coenzyme...   251   2e-65
BC080373_1(BC080373|pid:none) Xenopus tropicalis oxct1 protein, ...   248   8e-65
CR382138_1022(CR382138|pid:none) Debaryomyces hansenii strain CB...   247   2e-64
AK312327_1(AK312327|pid:none) Homo sapiens cDNA, FLJ92639, highl...   246   5e-64
BC042239_1(BC042239|pid:none) Xenopus laevis hypothetical protei...   246   5e-64
BC124298_1(BC124298|pid:none) Danio rerio 3-oxoacid CoA transfer...   245   9e-64
CR457049_1(CR457049|pid:none) Homo sapiens full open reading fra...   244   2e-63
AK299668_1(AK299668|pid:none) Homo sapiens cDNA FLJ51747 complet...   243   3e-63
(Q9D0K2) RecName: Full=Succinyl-CoA:3-ketoacid-coenzyme A transf...   243   3e-63
protein update 2009. 7.30
PSORT 

 psg: 0.61  gvh: 0.47  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSE557 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSE557Z
3' end seq. 
>VSE557Z.Seq
----------ATGCCAACATTGGCCAGTAATTTCATTCCAAAGGGTATTAGAATCGAATT
ACAATCAGAGAATGGCTTATTAGGTATGGGTCCATTCCCAAAAATGGGCGAACATGATGC
CGATTTAATCAATGCAGGTAAGGAAACCGTTACAACCATTCCAGGTTCTTCCATTTTCTC
AAGTGCTGATTCATTCGCAATGATTCGTGGTGGTCATGTTGATTTAACAATTCTTGGTGG
TATGCAAGTTAGTGGTAATGGTGATTTGGCCAATTGGGTCATTCCTGGCTCAATGGTTAA
AGGTCCAGGTGGTGCTATGGATTTAACTTCAAGTGGTTCACGTGTAGTTGTCATAATGGA
ACATACCACAAAACATGGAAAACCAAAGATTTTAAAGAATTGTACACTTCCACTCACTGG
TAAATCTTGTGTAAATAGAATCATCACTGAATTGGCAGTTTTCGATGTCGTCAATGGTAA
ATTAGAATTAATTGAAGTCGTTGATGGCCAAACAGTTGATGATATTAAATCTAAAACTGA
AGCAGAATTTACTGTTTCAAAAAATTTAAAACCATTACAACAAGTTGAAATTTAAAATAA
TAATAATAATAATAATAAAAATATCAACATTTCCTAAAAT
Length of 3' end seq. 630
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -