AFB811
Library AF
(Link to library)
Clone ID AFB811
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFB811P
(Link to Original site)
Representative DNA sequence
>AFB811 (AFB811Q) /CSM/AF/AFB8-A/AFB811Q.Seq.d/
AATATCATATTTATAATNTATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATGAG
ACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTNAATTTTGCATTATCAACAGTTCA
TTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAA
AGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAA
TCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCC
AAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAA
AGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATT
CGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAGAG
AGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAACAA
AGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTXXXXXXXXXXCAGAAG
CTGTCAAACCAGAGGATTGGAATGAANAAGACGACGGTGAATGGGAAGCCCCAACCATCG
CCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCNAATCCAGAATACAAAG
GTGAATGGGNACNCCCNTTNATTGATAACCCAGAATACGCTGAAGACAATGAACTNTACC
TCTTTAATGATNTCGGNGCTATCGGTTTCGAATTATGGCAAGTTNAATCTGGTTCCATCT
TTAACAATATGATCGTCNCCGACTCTGTCGAANAAGNTAAAGATTTNTNTGAAAAGACCT
TTGTTGCCAACCAANAAGCCGAAAANAAAATGTTTGACGNCCTNGAAGCCGCCAAAGCTG
AANANANAAANAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAANAAGCCG
AAGAAGCTGATGAAGAANAAGAAGAAGTCGCTGAAGAAGATTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
isyl*xiffv**KRKNTNMRLLLCLIFLVFVXNFALSTVHFKDTFDNDWESRWVVSDWHK
EDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKNEQK
VDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKKEINK
VETDQLTHQYTLVI---

---EAVKPEDWNEXDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWXXPXIDNPEYAED
NELYLFNDXGAIGFELWQVXSGSIFNNMIVXDSVEXXKDXXEKTFVANQXAEXKMFDXLE
AAKAEXXXKADEKLAAEKAAEKXAEEADEEXEEVAEEDL


Translated Amino Acid sequence (All Frames)
Frame A:
niifixylfclikkkeyqhetfivfnflsfcfxfciinssfqryl**rlgikmgc**la*
rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke*tk
s*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrkepfnqernqq
s*nrsinssihfgh---

---qklsnqrigmxkttvngkpqpspiqntkvngkqrksxiqntkvngxxxxlitqntlk
tmnxtslmxsxlsvsnygkxnlvpslti*ssptlsxkxkixxkrpllptxkpkxkcltxx
kppklxxxxkltkn*lpkkllkxkpkklmkxkkkslkki

Frame B:
isyl*xiffv**KRKNTNMRLLLCLIFLVFVXNFALSTVHFKDTFDNDWESRWVVSDWHK
EDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKNEQK
VDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKKEINK
VETDQLTHQYTLVI---

---rscqtrgle*xrrr*mgspnhrqsriqr*meskenpxsriqr*mgtpxx**prir*r
q*txpl**xrxyrfrimasxiwfhl*qydrxrlcrxx*rfx*kdlccqpxsrkxnv*rpx
srqs*xxkxs*rkiscrksc*kxsrrs**rxrrsr*rrf

Frame C:
yhiynxsflfnkkeript*dfycv*fs*flfxilhyqqfiskiplitignqdgllvigik
kmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*rmnkk
livvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttkerti*srkkstk
lkpin*lintlwsf---

---EAVKPEDWNEXDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWXXPXIDNPEYAED
NELYLFNDXGAIGFELWQVXSGSIFNNMIVXDSVEXXKDXXEKTFVANQXAEXKMFDXLE
AAKAEXXXKADEKLAAEKAAEKXAEEADEEXEEVAEEDL

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFB811 (AFB811Q) /CSM/AF/AFB8-A/AFB811Q.Seq.d/ 1723 0.0
VFB215 (VFB215Q) /CSM/VF/VFB2-A/VFB215Q.Seq.d/ 1134 0.0
VFA823 (VFA823Q) /CSM/VF/VFA8-A/VFA823Q.Seq.d/ 1134 0.0
AFL337 (AFL337Q) /CSM/AF/AFL3-B/AFL337Q.Seq.d/ 1134 0.0
AFE410 (AFE410Q) /CSM/AF/AFE4-A/AFE410Q.Seq.d/ 1134 0.0
AFB848 (AFB848Q) /CSM/AF/AFB8-B/AFB848Q.Seq.d/ 1134 0.0
CFA521 (CFA521Q) /CSM/CF/CFA5-A/CFA521Q.Seq.d/ 1132 0.0
AFB650 (AFB650Q) /CSM/AF/AFB6-C/AFB650Q.Seq.d/ 1132 0.0
AFE494 (AFE494Q) /CSM/AF/AFE4-D/AFE494Q.Seq.d/ 1130 0.0
AFD843 (AFD843Q) /CSM/AF/AFD8-B/AFD843Q.Seq.d/ 1130 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 1116 0.0 2
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 7e-24 3
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 3e-13 2
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 68 3e-09 2
AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 2e-07 1
AI782264|AI782264.1 EST263143 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES18L5, mRNA sequence. 68 2e-07 1
AW033447|AW033447.1 EST277018 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28B21 similar to calreticulin, putative, mRNA sequence. 68 2e-07 1
AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence. 68 2e-07 1
AW649196|AW649196.1 EST327650 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI7M10 5', mRNA sequence. 68 2e-07 1
AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence. 68 2e-07 1
dna update 2003. 7.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 338 1e-91
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 211 3e-53
U27698_1(U27698|pid:none) Arabidopsis thaliana calreticulin (AtC... 208 2e-52
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 208 2e-52
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 208 3e-52
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 207 6e-52
AY836753_1(AY836753|pid:none) Triticum aestivum calreticulin-lik... 206 1e-51
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 206 1e-51
AY086745_1(AY086745|pid:none) Arabidopsis thaliana clone 27210 m... 205 2e-51
AC003114_8(AC003114|pid:none) Arabidopsis thaliana chromosome 1 ... 205 2e-51
protein update 2009. 3.27
PSORT

psg: 1.00 gvh: 0.66 alm: 0.49 top: 0.10 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: nuclear
12.0 %: endoplasmic reticulum
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for AFB811 is exc

5' end seq. ID AFB811F
5' end seq.
>AFB811F.Seq
AATATCATATTTATAATNTATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATGAG
ACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTNAATTTTGCATTATCAACAGTTCA
TTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAA
AGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAA
TCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCC
AAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAA
AGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATT
CGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAGAG
AGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAACAA
AGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTT----------
Length of 5' end seq. 584
3' end seq. ID AFB811Z
3' end seq.
>AFB811Z.Seq
----------CAGAAGCTGTCAAACCAGAGGATTGGAATGAANAAGACGACGGTGAATGG
GAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCN
AATCCAGAATACAAAGGTGAATGGGNACNCCCNTTNATTGATAACCCAGAATACGCTGAA
GACAATGAACTNTACCTCTTTAATGATNTCGGNGCTATCGGTTTCGAATTATGGCAAGTT
NAATCTGGTTCCATCTTTAACAATATGATCGTCNCCGACTCTGTCGAANAAGNTAAAGAT
TTNTNTGAAAAGACCTTTGTTGCCAACCAANAAGCCGAAAANAAAATGTTTGACGNCCTN
GAAGCCGCCAAAGCTGAANANANAAANAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCT
GCTGAAAAANAAGCCGAAGAAGCTGATGAAGAANAAGAAGAAGTCGCTGAAGAAGATTTA
Length of 3' end seq. 470
Connected seq. ID AFB811P
Connected seq.
>AFB811P.Seq
AATATCATATTTATAATNTATCTTTTTTGTTTAATAAAAAAGAAAGAATACCAACATGAG
ACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTNAATTTTGCATTATCAACAGTTCA
TTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAA
AGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAA
TCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCC
AAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAA
AGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATT
CGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGCCTCAAAGAG
AGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAAGAAATCAACAA
AGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTT----------CAGAAG
CTGTCAAACCAGAGGATTGGAATGAANAAGACGACGGTGAATGGGAAGCCCCAACCATCG
CCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCNAATCCAGAATACAAAG
GTGAATGGGNACNCCCNTTNATTGATAACCCAGAATACGCTGAAGACAATGAACTNTACC
TCTTTAATGATNTCGGNGCTATCGGTTTCGAATTATGGCAAGTTNAATCTGGTTCCATCT
TTAACAATATGATCGTCNCCGACTCTGTCGAANAAGNTAAAGATTTNTNTGAAAAGACCT
TTGTTGCCAACCAANAAGCCGAAAANAAAATGTTTGACGNCCTNGAAGCCGCCAAAGCTG
AANANANAAANAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAANAAGCCG
AAGAAGCTGATGAAGAANAAGAAGAAGTCGCTGAAGAAGATTTA
Length of connected seq. 1054
Full length Seq ID -
Full length Seq. -
Length of full length seq. -