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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA404
Library AH
(Link to library)
Clone ID AHA404
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AHA404P
(Link to Original site)
Representative DNA sequence 
>AHA404 (AHA404Q) /CSM/AH/AHA4-A/AHA404Q.Seq.d/
AACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATGTAA
CTCCAAATAAAGAGTCAAAGATGTACGTTGTAAAAAGAGATGGTACAAAAGAAAATGTAT
CATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAAATT
CAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAGGTG
TAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACACGTC
ATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAACTT
CAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCAATT
TATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGAGAT
TGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACAT
TGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAGTGTCCACAACACATGT
TGATGCGTGTCTCCAXXXXXXXXXXTGATGCAATTCAATNCANTGTTGATCCAATCGTAT
CTCANACTCCACCCACCAGTTGAANCATAATATANACTCANGTACNCCACTTAAAACTCC
AAATAAAANTCCAAANTCTTC
sequence update 2002.10.25
Translated Amino Acid sequence 
hcy*nlkfly*MISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNS
DIVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTS
KSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTL
ERSYLHRINGKIVECPQHMLMRVS---

---MQFNXXLIQSYLXLHPPVEX*yxlxyxt*nsk*xskxf
Translated Amino Acid sequence (All Frames) 
Frame A:
niviki*nfyir**vivlm*lqiksqrctl*kemvqkkmyhliklhqefhfyvkwnqn*i
qi*liqlk*hkk*lveyfqv*rlqnwiiwqprqqhicqhviqimvfwqhvlvyrifinkl
qrvl*rqlrnnmnsliqraiywhhwsarssmks**nmvrdwrvsliiivisitisldskh
wnvpifivsmvklssvhntc*cvsp---

---*cnsxxc*snrisxsthqlxhnixsxtplktpnkxpxs

Frame B:
tlllkfkifilddk**y*cnsk*rvkdvrckkrwykrkcii**nyiknfifm*ngtkikf
rys*sn*sstkss*wsisrckdyrig*fgsrdssiyvntssrlwyfgsty*ciess*tnf
kefcrds*eti*ih*skeqfigtigqqgal*nrnetw*eigech*lls*frlrflwiqni
gtflsssyqw*ncrvstthvdacl---

---daiqxxvdpivsxtppts*xiixtxvxhlklqikxqxl

Frame C:
hcy*nlkfly*MISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNS
DIVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTS
KSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTL
ERSYLHRINGKIVECPQHMLMRVS---

---MQFNXXLIQSYLXLHPPVEX*yxlxyxt*nsk*xskxf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA404 (AHA404Q) /CSM/AH/AHA4-A/AHA404Q.Seq.d/                       1356   0.0
VHC688 (VHC688Q) /CSM/VH/VHC6-D/VHC688Q.Seq.d/                       1203   0.0
SHI114 (SHI114Q) /CSM/SH/SHI1-A/SHI114Q.Seq.d/                       1203   0.0
SHD315 (SHD315Q) /CSM/SH/SHD3-A/SHD315Q.Seq.d/                       1203   0.0
SHC647 (SHC647Q) /CSM/SH/SHC6-B/SHC647Q.Seq.d/                       1203   0.0
SHA878 (SHA878Q) /CSM/SH/SHA8-D/SHA878Q.Seq.d/                       1203   0.0
CHG734 (CHG734Q) /CSM/CH/CHG7-B/CHG734Q.Seq.d/                       1203   0.0
CHG522 (CHG522Q) /CSM/CH/CHG5-A/CHG522Q.Seq.d/                       1203   0.0
AHR370 (AHR370Q) /CSM/AH/AHR3-C/AHR370Q.Seq.d/                       1203   0.0
AHK759 (AHK759Q) /CSM/AH/AHK7-C/AHK759Q.Seq.d/                       1203   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z19158|Z19158.1 Caenorhabditis elegans cosmid T23G5.               38   2e-04  2
BJ112828|BJ112828.1 Caenorhabditis elegans cDNA clone:yk1160g04 : 5' end, single read.    38   2e-04  2
AU202763|AU202763.1 Caenorhabditis elegans cDNA clone:yk812d04 : 5' end, single read.    38   2e-04  2
BJ107550|BJ107550.1 Caenorhabditis elegans cDNA clone:yk1097g12 : 5' end, single read.    38   2e-04  2
CB385736|CB385736.1 OSTF029B1_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    38   2e-04  2
BJ115949|BJ115949.1 Caenorhabditis elegans cDNA clone:yk1197d08 : 5' end, single read.    38   2e-04  2
AU203702|AU203702.1 Caenorhabditis elegans cDNA clone:yk824c05 : 5' end, single read.    38   2e-04  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   0.001  12
AC145433|AC145433.2 Pan troglodytes BAC clone RP43-43I4 from 7, complete sequence.    36   0.002  8
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    38   0.007  10
dna update 2004. 2.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...   344   2e-93
S34807(S34807) ribonucleoside-diphosphate reductase (EC 1.17.4.1...   205   1e-51
AM270068_2(AM270068|pid:none) Aspergillus niger contig An04c0070...   200   3e-50
AM920437_1772(AM920437|pid:none) Penicillium chrysogenum Wiscons...   198   2e-49
CR382139_247(CR382139|pid:none) Debaryomyces hansenii strain CBS...   195   1e-48
AE016817_343(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...   193   5e-48
(P79732) RecName: Full=Ribonucleoside-diphosphate reductase larg...   187   2e-46
CU207366_3423(CU207366|pid:none) Gramella forsetii KT0803 comple...   187   3e-46
BC044356_1(BC044356|pid:none) Danio rerio ribonucleotide reducta...   187   4e-46
BC165359_1(BC165359|pid:none) Danio rerio cDNA clone IMAGE:10006...   187   4e-46
protein update 2009. 4.27
PSORT 

 psg: 0.79  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for AHA404 is cyt
5' end seq. ID AHA404F
5' end seq. 
>AHA404F.Seq
AACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATGTAA
CTCCAAATAAAGAGTCAAAGATGTACGTTGTAAAAAGAGATGGTACAAAAGAAAATGTAT
CATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAAATT
CAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAGGTG
TAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACACGTC
ATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAACTT
CAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCAATT
TATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGAGAT
TGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACAT
TGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAGTGTCCACAACACATGT
TGATGCGTGTCTCCANNNNNNNNNN
Length of 5' end seq. 625
3' end seq. ID AHA404Z
3' end seq. 
>AHA404Z.Seq
NNNNNNNNNNTGATGCAATTCAATNCANTGTTGATCCAATCGTATCTCANACTCCACCCA
CCAGTTGAANCATAATATANACTCANGTACNCCACTTAAAACTCCAAATAAAANTCCAAA
NTCTTC
Length of 3' end seq. 126
Connected seq. ID AHA404P
Connected seq. 
>AHA404P.Seq
AACATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATGTAA
CTCCAAATAAAGAGTCAAAGATGTACGTTGTAAAAAGAGATGGTACAAAAGAAAATGTAT
CATTTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAAATT
CAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAGGTG
TAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACACGTC
ATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAACTT
CAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCAATT
TATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGAGAT
TGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACAT
TGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAGTGTCCACAACACATGT
TGATGCGTGTCTCCA----------TGATGCAATTCAATNCANTGTTGATCCAATCGTAT
CTCANACTCCACCCACCAGTTGAANCATAATATANACTCANGTACNCCACTTAAAACTCC
AAATAAAANTCCAAANTCTTC
Length of connected seq. 731
Full length Seq ID -
Full length Seq. -
Length of full length seq. -