>VSE445 (VSE445Q) /CSM/VS/VSE4-B/VSE445Q.Seq.d/
XXXXXXXXXXAATGTTTATGTTTTAGGTTTAGATGGTAGAGAGTATATAGATAAAATGAA
TGGTCATAAGATAACTTAAGAGGTGAATGATAAAGTACCAATTTCAAATGAAACTGATAG
AGTTTACTTAAATGTTGTACCAACTCAAAGTATTGGAAAGAATTATCAACCATTACAATT
GATTGATAATGGTAGTCAAACTTCAATTACTCTAACCTATGATTATCAGTATGCCAGATG
TTGTTGTTTGGAATCCATGGATTGNTAAATCAAAGTAAATGGAAGATTTTGGTGATAATG
AATATCAAAATATGATTTGTATTGAAATTGGTACTATCAATACTCCTGTAAAATTATCAC
CAAATCAATCATTCCAAACTAAACATTCAATATTACCTTCAAATAAATCTTCATTATAAA
AAAAAAAAAAAAAAAAAAAAGTCAAAATAATAATAATAATAATAATAAAAACTAAGCTTT
ATAATTTA

---vyvlgldgreyidkmnghkit*EVNDKVPISNETDRVYLNVVPTQSIGKNYQPLQLI
DNGSQTSITLTYDYQYARCCCLESMDX*ikvngrfw***iskydly*nwyyqysckiitk
siipn*tfnitfk*ifiikkkkkkksqnnnnnnnkn*al*f

Frame A:
---mfmf*v*mvesi*ik*mvir*lkr*mikyqfqmklieft*mlyqlkvleriinhyn*
limvvklqll*pmiismpdvvvwnpwixksk*medfgdneyqnmicieigtintpvklsp
nqsfqtkhsilpsnkssl*kkkkkkkvkiiiiiiiktklynl


Frame B:
---clcfrfrw*rvyr*news*dnlrge**stnfk*n**sllkcctnskywkelstitid
**w*snfnysnl*lsvcqmllfgihglxnqskwkilvimniki*fvlklvlsill*nyhq
inhsklniqyylqinlhykkkkkkkksk*******klsfii


Frame C:
---vyvlgldgreyidkmnghkit*EVNDKVPISNETDRVYLNVVPTQSIGKNYQPLQLI
DNGSQTSITLTYDYQYARCCCLESMDX*ikvngrfw***iskydly*nwyyqysckiitk
siipn*tfnitfk*ifiikkkkkkksqnnnnnnnkn*al*f

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE445 (VSE445Q) /CSM/VS/VSE4-B/VSE445Q.Seq.d/                        801   0.0
SSG506 (SSG506Q) /CSM/SS/SSG5-A/SSG506Q.Seq.d/                        741   0.0
SLA513 (SLA513Q) /CSM/SL/SLA5-A/SLA513Q.Seq.d/                        644   0.0
VHQ215 (VHQ215Q) /CSM/VH/VHQ2-A/VHQ215Q.Seq.d/                        458   e-128
CHD581 (CHD581Q) /CSM/CH/CHD5-D/CHD581Q.Seq.d/                        454   e-127
VFE784 (VFE784Q) /CSM/VF/VFE7-D/VFE784Q.Seq.d/                        436   e-121
SFE360 (SFE360Q) /CSM/SF/SFE3-C/SFE360Q.Seq.d/                        426   e-118
SFD635 (SFD635Q) /CSM/SF/SFD6-B/SFD635Q.Seq.d/                        418   e-116
VSE443 (VSE443Q) /CSM/VS/VSE4-B/VSE443Q.Seq.d/                        373   e-102
SLD512 (SLD512Q) /CSM/SL/SLD5-A/SLD512Q.Seq.d/                        285   3e-76

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   135  e-124  9
AL365503|AL365503.10 Human DNA sequence from clone RP11-409K15 on chromosome 6.    46  0.40  1
T38301|T38301.1 EST103748 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    46  0.40  1
AX536706|AX536706.1 Sequence 307 from Patent WO02064766.          46  0.40  1
T36614|T36614.1 EST101581 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    46  0.40  1
Z49807|Z49807.1 S.cerevisiae chromosome XIII cosmid 6543.         46  0.40  1
AP005317|AP005317.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  0.77  2
N58321|N58321.1 yv68h08.s1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:247935 3', mRNA sequence.    36  1.3  2
BH154368|BH154368.1 ENTTQ88TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  1.4  2
AI675943|AI675943.1 wc42a02.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE:2321258 3' similar to contains Alu repetitive element;, mRNA sequence.    36  1.6  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134_2476(AE014134|pid:none) Drosophila melanogaster chromos...    68   1e-12
AE014134_2477(AE014134|pid:none) Drosophila melanogaster chromos...    68   1e-12
AK240826_1(AK240826|pid:none) Oryza sativa Japonica Group cDNA, ...    64   3e-12
AP008214_587(AP008214|pid:none) Oryza sativa (japonica cultivar-...    64   3e-12
AL606638_19(AL606638|pid:none) Oryza sativa genomic DNA, chromos...    63   4e-12
(Q40784) RecName: Full=Putative apospory-associated protein C;  ...    65   5e-12
AM460965_2(AM460965|pid:none) Vitis vinifera contig VV78X255145....    65   8e-12
CP001331_41(CP001331|pid:none) Micromonas sp. RCC299 chromosome ...    59   8e-12
CR855224_1(CR855224|pid:none) Oryza sativa genomic DNA, chromoso...    65   1e-11
AF480497_3(AF480497|pid:none) Oryza sativa clone BAC 24K23, comp...    65   1e-11

 psg: 0.75  gvh: 0.49  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VSE445 is nuc

>VSE445Z.Seq
----------AATGTTTATGTTTTAGGTTTAGATGGTAGAGAGTATATAGATAAAATGAA
TGGTCATAAGATAACTTAAGAGGTGAATGATAAAGTACCAATTTCAAATGAAACTGATAG
AGTTTACTTAAATGTTGTACCAACTCAAAGTATTGGAAAGAATTATCAACCATTACAATT
GATTGATAATGGTAGTCAAACTTCAATTACTCTAACCTATGATTATCAGTATGCCAGATG
TTGTTGTTTGGAATCCATGGATTGNTAAATCAAAGTAAATGGAAGATTTTGGTGATAATG
AATATCAAAATATGATTTGTATTGAAATTGGTACTATCAATACTCCTGTAAAATTATCAC
CAAATCAATCATTCCAAACTAAACATTCAATATTACCTTCAAATAAATCTTCATTATAAA
AAAAAAAAAAAAAAAAAAAAGTCAAAATAATAATAATAATAATAATAAAAACTAAGCTTT
ATAATTTA