VSE435
Library VS
(Link to library)
Clone ID VSE435
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15138-1
Original site URL
Representative seq. ID VSE435Z
(Link to Original site)
Representative DNA sequence
>VSE435 (VSE435Q) /CSM/VS/VSE4-B/VSE435Q.Seq.d/
XXXXXXXXXXTCGTACAACCTCTGATTATGACAAGACTCAACTCGAAACTCGTTTGGCAA
AGATTGGTGGTGGTGTTGCTGTTATTCGTGTCGGTGGAGCTTCAGAGGTTGAAGTTGGCG
AAAAGAAGGATCGTATCACCGATGCCCTCAACGCCACAAAGGCTGCCGTCGAAGAAGGTA
TTGTTCCAGGTGGTGGCACAGCACTCCTCTACTCTACTTTAGCACTCAAGAAAATTAAAA
TGGATAACTTTGATCAAACCATTGGTGTAAAGATCGTTAGAGATGCCCTTTTAATCCCAT
GTAAAACAATCGCAAATAATGCCGGTGTCGAAGGTTCTGTTGTCATTGGTCGTCTCTTAT
CAAAACGTGATTTCGAATATGGTTACAATGCTCAAAAAGGTGTTTATGAAAATATGATTC
AAGCTGGTATCATCGATCCAACTAAAGTTGTTCGTACCGCTTTAATCGATGCTGCTTCTG
TCGCTTCATTAATGACTACCACTGAAGCTATGGTAGTTGAAATTAAAAAAGATACTCCAA
TGCCACAAATGCCACCACAAATGGATTATTAAAAAATATAAATAAAGATTTTTTA
sequence update 2000. 6.23
Translated Amino Acid sequence
---RTTSDYDKTQLETRLAKIGGGVAVIRVGGASEVEVGEKKDRITDALNATKAAVEEGI
VPGGGTALLYSTLALKKIKMDNFDQTIGVKIVRDALLIPCKTIANNAGVEGSVVIGRLLS
KRDFEYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEIKKDTPM
PQMPPQMDY*ki*ikif


Translated Amino Acid sequence (All Frames)
Frame A:
---RTTSDYDKTQLETRLAKIGGGVAVIRVGGASEVEVGEKKDRITDALNATKAAVEEGI
VPGGGTALLYSTLALKKIKMDNFDQTIGVKIVRDALLIPCKTIANNAGVEGSVVIGRLLS
KRDFEYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEIKKDTPM
PQMPPQMDY*ki*ikif


Frame B:
---vqplimtrlnsklvwqrlvvvlllfvsvelqrlklakrrivspmpstpqrlpskkvl
fqvvaqhsstll*hsrklkwitlikplv*rslempf*shvkqsqimpvskvllslvvsyq
nvisnmvtmlkkvfmki*fklvssiqlklfvpl*smlllslh**lplklw*lklkkilqc
hkchhkwiikkyk*rff


Frame C:
---ynl*l*qdstrnsfgkdwwwcccyscrwsfrg*swrkegsyhrcpqrhkgcrrrryc
srwwhstpllyfstqen*ng*l*snhwckdr*rcpfnpm*nnrk*crcrrfcchwsslik
t*friwlqcskrcl*kydsswyhrsn*scsyrfnrccfcrfindyh*sygs*n*krysna
tnattngllkninkdfl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE435 (VSE435Q) /CSM/VS/VSE4-B/VSE435Q.Seq.d/ 1160 0.0
SLB321 (SLB321Q) /CSM/SL/SLB3-A/SLB321Q.Seq.d/ 1156 0.0
SFH320 (SFH320Q) /CSM/SF/SFH3-A/SFH320Q.Seq.d/ 733 0.0
FC-AO06 (FC-AO06Q) /CSM/FC/FC-AO/FC-AO06Q.Seq.d/ 577 e-164
VSE277 (VSE277Q) /CSM/VS/VSE2-D/VSE277Q.Seq.d/ 523 e-148
VFB833 (VFB833Q) /CSM/VF/VFB8-B/VFB833Q.Seq.d/ 272 6e-72
VSA431 (VSA431Q) /CSM/VS/VSA4-B/VSA431Q.Seq.d/ 38 0.15
SSG587 (SSG587Q) /CSM/SS/SSG5-D/SSG587Q.Seq.d/ 38 0.15
VSJ732 (VSJ732Q) /CSM/VS/VSJ7-B/VSJ732Q.Seq.d/ 36 0.59
VHK704 (VHK704Q) /CSM/VH/VHK7-A/VHK704Q.Seq.d/ 36 0.59

own update 2004. 5.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U72247|U72247.1 Dictyostelium discoideum chaperonin 60 (hspA) mRNA, complete cds. 1148 0.0 1
AF359268|AF359268.1 Dictyostelium discoideum chaperonin 60 gene, complete cds; nuclear gene for mitochondrial product. 1148 0.0 1
AY033884|AY033884.1 Neocallimastix patriciarum heat shock protein 60 precursor (Hsp60) mRNA, complete cds. 56 6e-15 3
AY078242|AY078242.1 Piromyces sp. E2 heat shock protein 60 (HSP60.2) mRNA, partial cds. 56 9e-15 3
U52924|U52924.1 Naegleria fowleri cpn-60 gene, partial cds. 80 4e-11 1
L11390|L11390.2 Ajellomyces capsulatus heat shock protein 60 (HSP60) gene, exons 1, 2 and 3 and complete cds. 48 4e-11 4
AF085694|AF085694.1 Candida albicans heat shock protein 60 (HSP60) gene, complete cds. 52 8e-11 3
AF299357|AF299357.1 Bartonella alsatica HSP60 gene, partial cds. 56 4e-10 3
AT001780|AT001780.1 Brassica rapa flower bud cDNA partial sequence, clone RF0187. 68 5e-10 2
AL395000|AL395000.1 T7 end of clone AR0AA020H06 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 34 9e-10 5
dna update 2003. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF359268_1(AF359268|pid:none) Dictyostelium discoideum chaperoni... 307 1e-82
AB048353_1(AB048353|pid:none) Paramecium caudatum mRNA for hsp60... 217 2e-55
CR932188_1(CR932188|pid:none) Paramecium tetraurelia, hsp60, put... 216 5e-55
CR932193_1(CR932193|pid:none) Paramecium tetraurelia, hsp60, put... 212 5e-54
(Q05046) RecName: Full=Chaperonin CPN60-2, mitochondrial; AltNam... 212 7e-54
(Q05045) RecName: Full=Chaperonin CPN60-1, mitochondrial; AltNam... 211 9e-54
(P29185) RecName: Full=Chaperonin CPN60-1, mitochondrial; AltNam... 209 4e-53
S26582(S26582) chaperonin hsp60 - maize &Z12114_1(Z12114|pid:no... 209 4e-53
S20875(S20875;S34488;S19844) chaperonin hsp60 precursor - maize ... 209 4e-53
L21007_1(L21007|pid:none) Corn nuclear-encoded mitochondrial cha... 207 1e-52
protein update 2009. 7.30
PSORT

psg: 0.60 gvh: 0.41 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VSE435 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSE435Z
3' end seq.
>VSE435Z.Seq
----------TCGTACAACCTCTGATTATGACAAGACTCAACTCGAAACTCGTTTGGCAA
AGATTGGTGGTGGTGTTGCTGTTATTCGTGTCGGTGGAGCTTCAGAGGTTGAAGTTGGCG
AAAAGAAGGATCGTATCACCGATGCCCTCAACGCCACAAAGGCTGCCGTCGAAGAAGGTA
TTGTTCCAGGTGGTGGCACAGCACTCCTCTACTCTACTTTAGCACTCAAGAAAATTAAAA
TGGATAACTTTGATCAAACCATTGGTGTAAAGATCGTTAGAGATGCCCTTTTAATCCCAT
GTAAAACAATCGCAAATAATGCCGGTGTCGAAGGTTCTGTTGTCATTGGTCGTCTCTTAT
CAAAACGTGATTTCGAATATGGTTACAATGCTCAAAAAGGTGTTTATGAAAATATGATTC
AAGCTGGTATCATCGATCCAACTAAAGTTGTTCGTACCGCTTTAATCGATGCTGCTTCTG
TCGCTTCATTAATGACTACCACTGAAGCTATGGTAGTTGAAATTAAAAAAGATACTCCAA
TGCCACAAATGCCACCACAAATGGATTATTAAAAAATATAAATAAAGATTTTTTA
Length of 3' end seq. 585
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -