VSE427
Library VS
(Link to library)
Clone ID VSE427
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06638-1
Original site URL
Representative seq. ID VSE427Z
(Link to Original site)
Representative DNA sequence
>VSE427 (VSE427Q) /CSM/VS/VSE4-B/VSE427Q.Seq.d/
XXXXXXXXXXCAAATCCATGAAACTAAATATAAATGCCTTCAAAGATATAAATTAGAAAA
TGTGAATTTTGATGAAAATAATTTAACTGAAGCAGTACATAGTTTAGCAAAATTATTTAA
TTATGACATTAAACCAACAGATGTTCATTATACAGCTTTATTATCAATGATTGTTAGAGT
TGCTGAAAGAAAATTCAATGATGTTCCATCATTAATCAAAGATGAAGAAGAAAGAAAAAA
GAAATTAGAGACTACAACCACAACTACAACTACATCAACAACAACTAATAACAATAATGA
TAATTTAAATGATAATAGTAAAAATGAAATTGTTAATAATAATATTTTCCCATTAGGATT
TGACTTTAAGGATGATAAAATGAATAGTGCAGCAACAATTTTAAGATTACTTTATGTTTC
AGATTTAAGAGAATTACAAAATAAAATTAATCAAGTTTTATCAATTGTTCAAAATTATAC
AGCAAATCCAGAAACAAATTTTAAATTGGCTGTTGTTGGTAGATAATATAAAAAATAAAA
TAAAAAAATAAATATGAAATAATAAAAAAAAAAA
sequence update 2000. 6.23
Translated Amino Acid sequence
---IHETKYKCLQRYKLENVNFDENNLTEAVHSLAKLFNYDIKPTDVHYTALLSMIVRVA
ERKFNDVPSLIKDEEERKKKLETTTTTTTTSTTTNNNNDNLNDNSKNEIVNNNIFPLGFD
FKDDKMNSAATILRLLYVSDLRELQNKINQVLSIVQNYTANPETNFKLAVVGR*ykk*nk
kinmk**kkk


Translated Amino Acid sequence (All Frames)
Frame A:
---ksmklninafkdin*km*ilmkii*lkqyiv*qnylimtlnqqmfiiqlyyq*llel
lkensmmfhh*skmkkkekrn*rlqpqlqlhqqqlitimii*miivkmklliiifsh*dl
tlrmik*ivqqqf*dyfmfqi*enykiklikfyqlfkiiqqiqkqilnwlllvdniknki
kk*i*nnkkk


Frame B:
---np*n*i*mpski*irkcef**k*fn*sst*fskii*l*h*tnrcslysfiindc*sc
*kkiq*csiinqr*rrkkkeirdynhnynyinnn**q***fk****k*nc***yfpiri*
l*g**ne*csnnfkitlcfrfkritk*n*ssfincsklysksrnkf*igccw*ii*kik*
knkyeiikkk


Frame C:
---IHETKYKCLQRYKLENVNFDENNLTEAVHSLAKLFNYDIKPTDVHYTALLSMIVRVA
ERKFNDVPSLIKDEEERKKKLETTTTTTTTSTTTNNNNDNLNDNSKNEIVNNNIFPLGFD
FKDDKMNSAATILRLLYVSDLRELQNKINQVLSIVQNYTANPETNFKLAVVGR*ykk*nk
kinmk**kkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE427 (VSE427Q) /CSM/VS/VSE4-B/VSE427Q.Seq.d/ 410 e-114
SSL603 (SSL603Q) /CSM/SS/SSL6-A/SSL603Q.Seq.d/ 56 6e-07
VHH277 (VHH277Q) /CSM/VH/VHH2-D/VHH277Q.Seq.d/ 50 4e-05
VFM284 (VFM284Q) /CSM/VF/VFM2-D/VFM284Q.Seq.d/ 50 4e-05
SFB613 (SFB613Q) /CSM/SF/SFB6-A/SFB613Q.Seq.d/ 50 4e-05
CHL425 (CHL425Q) /CSM/CH/CHL4-B/CHL425Q.Seq.d/ 50 4e-05
CHJ160 (CHJ160Q) /CSM/CH/CHJ1-C/CHJ160Q.Seq.d/ 50 4e-05
SLG110 (SLG110Q) /CSM/SL/SLG1-A/SLG110Q.Seq.d/ 48 1e-04
SFB122 (SFB122Q) /CSM/SF/SFB1-A/SFB122Q.Seq.d/ 48 1e-04
VHB296 (VHB296Q) /CSM/VH/VHB2-D/VHB296Q.Seq.d/ 46 6e-04

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 353 0.0 4
AC129737|AC129737.3 Rattus norvegicus clone CH230-506G1, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 58 1e-04 1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 52 0.001 3
AC117073|AC117073.2 Dictyostelium discoideum chromosome 2 map 6045872-6061342 strain AX4, complete sequence. 44 0.002 4
BX163360|BX163360.1 Danio rerio genomic clone DKEY-166H20, genomic survey sequence. 40 0.002 2
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. 46 0.003 5
AX463546|AX463546.1 Sequence 2 from Patent WO0250293. 52 0.008 1
AJ314911|AJ314911.1 Dictyostelium discoideum DrnA gene for putative RNaseIII, exons 1-3. 52 0.008 1
BM165417|BM165417.1 EST567940 PyBS Plasmodium yoelii yoelii cDNA clone PYCMM72 5' end, mRNA sequence. 52 0.008 1
AX651760|AX651760.1 Sequence 606 from Patent WO03000898. 52 0.008 1
dna update 2003. 8.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116960_72(AC116960|pid:none) Dictyostelium discoideum chromoso... 268 1e-70
BT081491_1(BT081491|pid:none) Rana catesbeiana clone rcat-evr-53... 62 1e-08
AY817175_1(AY817175|pid:none) Homo sapiens CLE mRNA, complete cds. 60 4e-08
AY533217_1(AY533217|pid:none) Chinchilla lanigera homeobox prox ... 60 4e-08
(Q5R8I2) RecName: Full=UPF0568 protein C14orf166 homolog; &(Q9Y... 60 4e-08
BC087359_1(BC087359|pid:none) Xenopus laevis hypothetical LOC496... 60 4e-08
DQ215080_1(DQ215080|pid:none) Taeniopygia guttata clone 0058P000... 60 6e-08
U46756_1(U46756|pid:none) Gallus gallus CLE7 mRNA, complete cds. 60 6e-08
BT077052_1(BT077052|pid:none) Caligus rogercresseyi clone crog-e... 59 9e-08
BT076044_1(BT076044|pid:none) Caligus rogercresseyi clone crog-e... 59 9e-08
protein update 2009. 7.30
PSORT

psg: 0.57 gvh: 0.39 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VSE427 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSE427Z
3' end seq.
>VSE427Z.Seq
----------CAAATCCATGAAACTAAATATAAATGCCTTCAAAGATATAAATTAGAAAA
TGTGAATTTTGATGAAAATAATTTAACTGAAGCAGTACATAGTTTAGCAAAATTATTTAA
TTATGACATTAAACCAACAGATGTTCATTATACAGCTTTATTATCAATGATTGTTAGAGT
TGCTGAAAGAAAATTCAATGATGTTCCATCATTAATCAAAGATGAAGAAGAAAGAAAAAA
GAAATTAGAGACTACAACCACAACTACAACTACATCAACAACAACTAATAACAATAATGA
TAATTTAAATGATAATAGTAAAAATGAAATTGTTAATAATAATATTTTCCCATTAGGATT
TGACTTTAAGGATGATAAAATGAATAGTGCAGCAACAATTTTAAGATTACTTTATGTTTC
AGATTTAAGAGAATTACAAAATAAAATTAATCAAGTTTTATCAATTGTTCAAAATTATAC
AGCAAATCCAGAAACAAATTTTAAATTGGCTGTTGTTGGTAGATAATATAAAAAATAAAA
TAAAAAAATAAATATGAAATAATAAAAAAAAAAA
Length of 3' end seq. 564
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -