>VSE387 (VSE387Q) /CSM/VS/VSE3-D/VSE387Q.Seq.d/
XXXXXXXXXXCCAACTGAAGCATACGCCTATATGGCCGCTAAAGGTATCACTGATGAAAC
TTGTGCTCCATATGAAGCAATTGATAATGAATGTAATGCTGAAGGTATTTGCAAAAACTG
TAACTTTGATTTATCAAACCCAACTGCTGATTGTTTCGCTCAACCAACTTATACTACTTA
TTTCGTTGAAGAACACGGTCAAGTTAATGGCTCAGTTGCTATGATGCAAGAAATTTTCGC
TCGTGGTCCAATTGCCTGTGGTATGGAAGTTACTGATGCATTCGAATCATACACAAGTGG
TGTTTTCACCTCATCAGTTGGTTCAACTGGTGAAATTAATCACGAAATCTCAATCATTGG
TTGGGGTACTGAAAATGGTGTTGACTATTGGATTGGTCGTAACTCATGGGGTACATATTT
TGGTGAATTAGGTTTCTTTAGAATTCAACGTGGTATTGATCTTTTATCAATTGAAAGTGC
TTGCGATTGGGCTGTTCCAAAGAACTTAGAATAAAAAAACATCTAAAATAATAAAAAATA
ATAAAAAAAATAAAAAAAAATATTAGTGTGTTATTACAATAATTTTTAAA

---TEAYAYMAAKGITDETCAPYEAIDNECNAEGICKNCNFDLSNPTADCFAQPTYTTYF
VEEHGQVNGSVAMMQEIFARGPIACGMEVTDAFESYTSGVFTSSVGSTGEINHEISIIGW
GTENGVDYWIGRNSWGTYFGELGFFRIQRGIDLLSIESACDWAVPKNLE*kni*nnkk**
kk*kkilvcyynnf*

Frame A:
---qlkhtpiwplkvslmklvlhmkqlimnvmlkvfaktvtliyqtqllivslnqlilli
slkntvklmaqll*ckkfslvvqlpvvwkllmhsnhtqvvfsphqlvqlvklitksqslv
gvlkmvltiglvvthgvhilvn*vslefnvvlifyqlkvlaiglfqrt*nkktskiiknn
kknkkky*cvitiifk


Frame B:
---n*sirlygr*ryh**nlcsi*sn***m*c*rylqkl*l*fikpnc*lfrstnlyylf
r*rtrss*wlscydarnfrswsnclwygsy*ciriihkwcfhliswfnw*n*srnlnhwl
gy*kwc*lldws*lmgyifw*irfl*nstwy*sfin*kclrlgcskelrikkhlk**kii
kkikknisvllq*fl


Frame C:
---TEAYAYMAAKGITDETCAPYEAIDNECNAEGICKNCNFDLSNPTADCFAQPTYTTYF
VEEHGQVNGSVAMMQEIFARGPIACGMEVTDAFESYTSGVFTSSVGSTGEINHEISIIGW
GTENGVDYWIGRNSWGTYFGELGFFRIQRGIDLLSIESACDWAVPKNLE*kni*nnkk**
kk*kkilvcyynnf*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE387 (VSE387Q) /CSM/VS/VSE3-D/VSE387Q.Seq.d/                        989   0.0
VSC611 (VSC611Q) /CSM/VS/VSC6-A/VSC611Q.Seq.d/                        989   0.0
VSC338 (VSC338Q) /CSM/VS/VSC3-B/VSC338Q.Seq.d/                        989   0.0
VSC287 (VSC287Q) /CSM/VS/VSC2-D/VSC287Q.Seq.d/                        989   0.0
VHB474 (VHB474Q) /CSM/VH/VHB4-D/VHB474Q.Seq.d/                        989   0.0
VHB270 (VHB270Q) /CSM/VH/VHB2-C/VHB270Q.Seq.d/                        989   0.0
VHA636 (VHA636Q) /CSM/VH/VHA6-B/VHA636Q.Seq.d/                        989   0.0
VFM859 (VFM859Q) /CSM/VF/VFM8-C/VFM859Q.Seq.d/                        989   0.0
VSC763 (VSC763Q) /CSM/VS/VSC7-C/VSC763Q.Seq.d/                        981   0.0
VSF505 (VSF505Q) /CSM/VS/VSF5-A/VSF505Q.Seq.d/                        975   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU263070) Dictyostelium discoideum vegetative cDNA clone:VS...   989   0.0    2
(BJ435254) Dictyostelium discoideum cDNA clone:ddv26f16, 3' ...   989   0.0    2
(C93004) Dictyostelium discoideum slug cDNA, clone SSF438.        989   0.0    2
(AU262455) Dictyostelium discoideum vegetative cDNA clone:VS...   989   0.0    2
(AU262670) Dictyostelium discoideum vegetative cDNA clone:VS...   989   0.0    2
(AU262778) Dictyostelium discoideum vegetative cDNA clone:VS...   981   0.0    2
(AU262654) Dictyostelium discoideum vegetative cDNA clone:VS...   965   0.0    2
(AU262492) Dictyostelium discoideum vegetative cDNA clone:VS...   989   0.0    1
(BJ437285) Dictyostelium discoideum cDNA clone:ddv33d20, 3' ...   989   0.0    1
(BJ437244) Dictyostelium discoideum cDNA clone:ddv33k18, 3' ...   989   0.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001326_736(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   162   5e-39
U30877_1(U30877|pid:none) Urechis caupo cathepsin B-like proteas...   117   3e-25
AF143817_1(AF143817|pid:none) Toxocara canis cathepsin Z1 prepro...   115   7e-25
T29872(T29872)hypothetical protein F32B5.8 - Caenorhabditis eleg...   114   2e-24
U71150_1(U71150|pid:none) Onchocerca volvulus cysteine protease ...   113   4e-24
AY591516_1(AY591516|pid:none) Onchocerca volvulus cathepsin Z pr...   111   1e-23
AY533170_1(AY533170|pid:none) Brugia malayi cathepsin Z-like cys...   110   2e-23
T23720(T23720) hypothetical protein M04G12.2 - Caenorhabditis el...   107   2e-22
AY226449_1(AY226449|pid:none) Fundulus heteroclitus cathepsin Z ...   107   3e-22
AY890922_1(AY890922|pid:none) Synthetic construct Homo sapiens c...   103   4e-21

 psg: 0.68  gvh: 0.44  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSE387 is cyt

>VSE387Z.Seq
----------CCAACTGAAGCATACGCCTATATGGCCGCTAAAGGTATCACTGATGAAAC
TTGTGCTCCATATGAAGCAATTGATAATGAATGTAATGCTGAAGGTATTTGCAAAAACTG
TAACTTTGATTTATCAAACCCAACTGCTGATTGTTTCGCTCAACCAACTTATACTACTTA
TTTCGTTGAAGAACACGGTCAAGTTAATGGCTCAGTTGCTATGATGCAAGAAATTTTCGC
TCGTGGTCCAATTGCCTGTGGTATGGAAGTTACTGATGCATTCGAATCATACACAAGTGG
TGTTTTCACCTCATCAGTTGGTTCAACTGGTGAAATTAATCACGAAATCTCAATCATTGG
TTGGGGTACTGAAAATGGTGTTGACTATTGGATTGGTCGTAACTCATGGGGTACATATTT
TGGTGAATTAGGTTTCTTTAGAATTCAACGTGGTATTGATCTTTTATCAATTGAAAGTGC
TTGCGATTGGGCTGTTCCAAAGAACTTAGAATAAAAAAACATCTAAAATAATAAAAAATA
ATAAAAAAAATAAAAAAAAATATTAGTGTGTTATTACAATAATTTTTAAA