AFB810
Library AF
(Link to library)
Clone ID AFB810
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16377-1
Original site URL
Representative seq. ID AFB810P
(Link to Original site)
Representative DNA sequence
>AFB810 (AFB810Q) /CSM/AF/AFB8-A/AFB810Q.Seq.d/
ATTNATCACCCTACAATTTAATTACATACATATATATATATAAACAATAATAAAAATGGG
TTTCCGTTTCTTAGATATTGTTAAACCATTTACCTCACTCGTTCCAGAGGTTGGTCAACC
AGATAGAAAAATTCCTTTCCGTGAAAAGGTTCTTTGGACAGCAATTTGTTTATTCATTTT
CTTAGTTTGCAGTCAAATTCCACTTTATGGTATTAGATCAACTGATTCATCAGATCCATT
TTACTGGGCTAAAGTTGTTATGGCCTCAAACAGAGGTACTTTAATGGAATTAGGTATTTC
ACCAATCGTTACATCAGGTATGGTTATGCAATTATTAGCAGGTGCCAAATTAATTGAAAT
TGATCAATCTGTTAAAGCCGATAGAGATTTATTCTCTGCTGCCCAAAAATTATTTGGTAT
GTTAATTTGTGTAGGTCAAGGTGTAGCTTATATTTGGAGTGGTTCATATGGTGATCCAGC
AGTTTTAGGATTTGGTAACTGCTTTTTAATTGTTTTACAATTATTCTTTGCAGGTATTAT
TGTTATGCTTTTGGATGAACTTTXXXXXXXXXXCTTCCAGTTAAATCAACTCGTGTAAGT
GGTCAACAAGGTACCTATCCAATCAAGTTATTCTACACTTCAAATATTCCAATCATTCTT
CAAAGTGCACTCGTTAGCAATCTTTATTTCATCTCTCAATTATTGTATCGTCGTTTCCCA
GATAACATTTTGGTAAACTTATTTGGTGCTTGGAGAACCAGTGAATATTCACAACAAATG
ATTCCAGTCTCTGGTCTCACCTATTACATCAGCTCCCCAAATAATATGAGCGCTGTTTTG
GCCGATCCATTCCATGCCCTCTTTTACATCACCTTTATGTTGACAAGTTGTGCTCTNTTC
TCCAAAGTTTGGATCGAAGTTAGTGGTTCCTCTGCTCGTGACGTTGCTAAGCAACTCAAA
GATCAACAAATGACCATGAAAGGTCATCGTGATACCTCTGTCATCAAGGAACTCAATCGT
TATATTCCAACCGCTGCCGCTTTTGGTGGTCTCTGTATTGGTGCTCTCACTGTCGTCGCC
GATTTCATGGGTGCCATCGGTTCTGGNACNGGNATTTTATTAGCTGTCACTATCATCTAT
CAATACTTTAAACCTTGTTAAAGAACAACAAGAACNTTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
xitlqfnyihiyi*TIIKMGFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIF
LVCSQIPLYGIRSTDSSDPFYWAKVVMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEI
DQSVKADRDLFSAAQKLFGMLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGII
VMLLDEL---

---LPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSNLYFISQLLYRRFPDNILVNLF
GAWRTSEYSQQMIPVSGLTYYISSPNNMSAVLADPFHALFYITFMLTSCALFSKVWIEVS
GSSARDVAKQLKDQQMTMKGHRDTSVIKELNRYIPTAAAFGGLCIGALTVVADFMGAIGS
GTGILLAVTIIYQYFKPC*rttrtf


Translated Amino Acid sequence (All Frames)
Frame A:
ixhpti*lhtyiyinnnkngfpflryc*tiyltrsrgwstr*knsfp*kgsldsnlfihf
lslqsnstlwy*in*firsillg*scyglkqryfngiryftnryirygyaiisrcqin*n
*sic*sr*rfilccpkiiwyvnlcrsrcslylewfiw*sssfriw*llfncftiilcryy
cyafg*t---

---LPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSNLYFISQLLYRRFPDNILVNLF
GAWRTSEYSQQMIPVSGLTYYISSPNNMSAVLADPFHALFYITFMLTSCALFSKVWIEVS
GSSARDVAKQLKDQQMTMKGHRDTSVIKELNRYIPTAAAFGGLCIGALTVVADFMGAIGS
GTGILLAVTIIYQYFKPC*rttrtf

Frame B:
xitlqfnyihiyi*TIIKMGFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIF
LVCSQIPLYGIRSTDSSDPFYWAKVVMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEI
DQSVKADRDLFSAAQKLFGMLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGII
VMLLDEL---

---fqlnqlv*vvnkvpiqssystlqifqsffkvhslaifisslnycivvsqitfw*tyl
vlgepvnihnk*fqslvspitsapqii*alfwpihsmpsftsplc*qvvlxspkfgsklv
vpllvtllsnskink*p*kviviplssrnsivifqplpllvvsvlvlslsspiswvpsvl
xxxfy*lslssintlnlvkeqqex

Frame C:
xspynlityiyiykq**kwvsvs*illnhlphsfqrlvnqiekflsvkrffgqqfvysfs
*favkfhfmvldqlihqihftglkllwpqtevl*wn*vfhqslhqvwlcny*qvpn*lkl
inllkpieiysllpknylvc*fv*vkv*lifgvvhmviqqf*dlvtaf*lfynyslqvll
lcfwmnf---

---ss*insckwstrylsnqvilhfkysnhsskctr*qslfhlsiivssfpr*hfgkliw
clenq*ifttndsslwshllhqlpk*yercfgrsipcpllhhlyvdklcsxlqsldrs*w
flcs*rc*atqrstndherss*ylchqgtqslysnrcrfwwslywcshcrrrfhgchrfw
xxxfischyhlsil*tllknnknx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFB810 (AFB810Q) /CSM/AF/AFB8-A/AFB810Q.Seq.d/ 2165 0.0
AFJ644 (AFJ644Q) /CSM/AF/AFJ6-B/AFJ644Q.Seq.d/ 1166 0.0
AFN244 (AFN244Q) /CSM/AF/AFN2-B/AFN244Q.Seq.d/ 1156 0.0
AFM582 (AFM582Q) /CSM/AF/AFM5-D/AFM582Q.Seq.d/ 1148 0.0
AFL739 (AFL739Q) /CSM/AF/AFL7-B/AFL739Q.Seq.d/ 1144 0.0
SFE855 (SFE855Q) /CSM/SF/SFE8-C/SFE855Q.Seq.d/ 1142 0.0
AFN236 (AFN236Q) /CSM/AF/AFN2-B/AFN236Q.Seq.d/ 1142 0.0
AFK145 (AFK145Q) /CSM/AF/AFK1-B/AFK145Q.Seq.d/ 1140 0.0
AFI825 (AFI825Q) /CSM/AF/AFI8-B/AFI825Q.Seq.d/ 1140 0.0
SFF734 (SFF734Q) /CSM/SF/SFF7-B/SFF734Q.Seq.d/ 1138 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI742394|BI742394.1 kt50c06.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:O18239 O18239 Y57G11C.15 PROTEIN. [1] ;, mRNA sequence. 82 1e-17 2
BI742376|BI742376.1 kt50a06.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:O18239 O18239 Y57G11C.15 PROTEIN. [1] ;, mRNA sequence. 82 1e-17 2
BQ995344|BQ995344.1 QGF9L22.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGF9L22, mRNA sequence. 72 1e-16 3
BQ853432|BQ853432.1 QGB20H22.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20H22, mRNA sequence. 72 1e-16 3
AJ306295|AJ306295.1 Pichia anomala fbp1 and sec61 genes, ORF2 and ORF4-7 DNA. 72 6e-15 5
AL668163|AL668163.1 Ciona intestinalis; larval mRNA; EST 5PRIM end of clone 030ZH11 of library directional larval cDNA library from Ciona intestinalis (Ciona). 60 2e-12 3
AF006204|AF006204.1 Plasmodium falciparum PfSec61 (PfSec61) gene, complete cds. 58 4e-12 3
BQ861476|BQ861476.1 QGC18L16.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC18L16, mRNA sequence. 72 1e-11 3
AV996249|AV996249.1 Ciona intestinalis cDNA, clone:citb43n15, 5' end, single read. 60 5e-11 2
BM393451|BM393451.1 50072-2-1-B09.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 76 6e-11 2
dna update 2003. 7.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54XK2) RecName: Full=Protein transport protein Sec61 subunit a... 381 e-104
AC004481_8(AC004481|pid:none) Arabidopsis thaliana chromosome 2 ... 303 6e-81
EF676421_1(EF676421|pid:none) Picea sitchensis clone WS02736_J13... 303 7e-81
AK100597_1(AK100597|pid:none) Oryza sativa Japonica Group cDNA c... 302 2e-80
BT055508_1(BT055508|pid:none) Zea mays full-length cDNA clone ZM... 301 4e-80
EF147330_1(EF147330|pid:none) Populus trichocarpa clone WS0122_K... 301 4e-80
AY087495_1(AY087495|pid:none) Arabidopsis thaliana clone 36037 m... 298 3e-79
AY044237_1(AY044237|pid:none) Hordeum vulgare Sec61 alpha subuni... 296 7e-79
AF161718_1(AF161718|pid:none) Triticum aestivum Sec61p (sec61) m... 296 7e-79
AC121241_9(AC121241|pid:none) Medicago truncatula clone mth2-4n3... 293 6e-78
protein update 2009. 3.27
PSORT

psg: 0.81 gvh: 0.68 alm: 0.15 top: 0.47 tms: 0.47 mit: 0.31 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
36.0 %: plasma membrane
16.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for AFB810 is end

5' end seq. ID AFB810F
5' end seq.
>AFB810F.Seq
ATTNATCACCCTACAATTTAATTACATACATATATATATATAAACAATAATAAAAATGGG
TTTCCGTTTCTTAGATATTGTTAAACCATTTACCTCACTCGTTCCAGAGGTTGGTCAACC
AGATAGAAAAATTCCTTTCCGTGAAAAGGTTCTTTGGACAGCAATTTGTTTATTCATTTT
CTTAGTTTGCAGTCAAATTCCACTTTATGGTATTAGATCAACTGATTCATCAGATCCATT
TTACTGGGCTAAAGTTGTTATGGCCTCAAACAGAGGTACTTTAATGGAATTAGGTATTTC
ACCAATCGTTACATCAGGTATGGTTATGCAATTATTAGCAGGTGCCAAATTAATTGAAAT
TGATCAATCTGTTAAAGCCGATAGAGATTTATTCTCTGCTGCCCAAAAATTATTTGGTAT
GTTAATTTGTGTAGGTCAAGGTGTAGCTTATATTTGGAGTGGTTCATATGGTGATCCAGC
AGTTTTAGGATTTGGTAACTGCTTTTTAATTGTTTTACAATTATTCTTTGCAGGTATTAT
TGTTATGCTTTTGGATGAACTTT----------
Length of 5' end seq. 563
3' end seq. ID AFB810Z
3' end seq.
>AFB810Z.Seq
----------CTTCCAGTTAAATCAACTCGTGTAAGTGGTCAACAAGGTACCTATCCAAT
CAAGTTATTCTACACTTCAAATATTCCAATCATTCTTCAAAGTGCACTCGTTAGCAATCT
TTATTTCATCTCTCAATTATTGTATCGTCGTTTCCCAGATAACATTTTGGTAAACTTATT
TGGTGCTTGGAGAACCAGTGAATATTCACAACAAATGATTCCAGTCTCTGGTCTCACCTA
TTACATCAGCTCCCCAAATAATATGAGCGCTGTTTTGGCCGATCCATTCCATGCCCTCTT
TTACATCACCTTTATGTTGACAAGTTGTGCTCTNTTCTCCAAAGTTTGGATCGAAGTTAG
TGGTTCCTCTGCTCGTGACGTTGCTAAGCAACTCAAAGATCAACAAATGACCATGAAAGG
TCATCGTGATACCTCTGTCATCAAGGAACTCAATCGTTATATTCCAACCGCTGCCGCTTT
TGGTGGTCTCTGTATTGGTGCTCTCACTGTCGTCGCCGATTTCATGGGTGCCATCGGTTC
TGGNACNGGNATTTTATTAGCTGTCACTATCATCTATCAATACTTTAAACCTTGTTAAAG
AACAACAAGAACNTTC
Length of 3' end seq. 606
Connected seq. ID AFB810P
Connected seq.
>AFB810P.Seq
ATTNATCACCCTACAATTTAATTACATACATATATATATATAAACAATAATAAAAATGGG
TTTCCGTTTCTTAGATATTGTTAAACCATTTACCTCACTCGTTCCAGAGGTTGGTCAACC
AGATAGAAAAATTCCTTTCCGTGAAAAGGTTCTTTGGACAGCAATTTGTTTATTCATTTT
CTTAGTTTGCAGTCAAATTCCACTTTATGGTATTAGATCAACTGATTCATCAGATCCATT
TTACTGGGCTAAAGTTGTTATGGCCTCAAACAGAGGTACTTTAATGGAATTAGGTATTTC
ACCAATCGTTACATCAGGTATGGTTATGCAATTATTAGCAGGTGCCAAATTAATTGAAAT
TGATCAATCTGTTAAAGCCGATAGAGATTTATTCTCTGCTGCCCAAAAATTATTTGGTAT
GTTAATTTGTGTAGGTCAAGGTGTAGCTTATATTTGGAGTGGTTCATATGGTGATCCAGC
AGTTTTAGGATTTGGTAACTGCTTTTTAATTGTTTTACAATTATTCTTTGCAGGTATTAT
TGTTATGCTTTTGGATGAACTTT----------CTTCCAGTTAAATCAACTCGTGTAAGT
GGTCAACAAGGTACCTATCCAATCAAGTTATTCTACACTTCAAATATTCCAATCATTCTT
CAAAGTGCACTCGTTAGCAATCTTTATTTCATCTCTCAATTATTGTATCGTCGTTTCCCA
GATAACATTTTGGTAAACTTATTTGGTGCTTGGAGAACCAGTGAATATTCACAACAAATG
ATTCCAGTCTCTGGTCTCACCTATTACATCAGCTCCCCAAATAATATGAGCGCTGTTTTG
GCCGATCCATTCCATGCCCTCTTTTACATCACCTTTATGTTGACAAGTTGTGCTCTNTTC
TCCAAAGTTTGGATCGAAGTTAGTGGTTCCTCTGCTCGTGACGTTGCTAAGCAACTCAAA
GATCAACAAATGACCATGAAAGGTCATCGTGATACCTCTGTCATCAAGGAACTCAATCGT
TATATTCCAACCGCTGCCGCTTTTGGTGGTCTCTGTATTGGTGCTCTCACTGTCGTCGCC
GATTTCATGGGTGCCATCGGTTCTGGNACNGGNATTTTATTAGCTGTCACTATCATCTAT
CAATACTTTAAACCTTGTTAAAGAACAACAAGAACNTTC
Length of connected seq. 1169
Full length Seq ID -
Full length Seq. -
Length of full length seq. -