>VSE320 (VSE320Q) /CSM/VS/VSE3-A/VSE320Q.Seq.d/
GAACTCACCACCAAATAAATAAATTTTTAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA

nsppnk*IFKILKKKKKKKKKKKKKKKKKKKKK

Frame A:
elttk*inf*nfkkkkkkkkkkkkkekkkkkkk


Frame B:
nsppnk*IFKILKKKKKKKKKKKKKKKKKKKKK


Frame C:
thhqinkflkf*kkkkkkkkkkkkrkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE320 (VSE320Q) /CSM/VS/VSE3-A/VSE320Q.Seq.d/                         72   2e-12
VSA629 (VSA629Q) /CSM/VS/VSA6-B/VSA629Q.Seq.d/                         58   2e-08
VSK311 (VSK311Q) /CSM/VS/VSK3-A/VSK311Q.Seq.d/                         56   9e-08
VSK120 (VSK120Q) /CSM/VS/VSK1-A/VSK120Q.Seq.d/                         56   9e-08
VSJ809 (VSJ809Q) /CSM/VS/VSJ8-A/VSJ809Q.Seq.d/                         56   9e-08
VSJ192 (VSJ192Q) /CSM/VS/VSJ1-D/VSJ192Q.Seq.d/                         56   9e-08
VSB266 (VSB266Q) /CSM/VS/VSB2-C/VSB266Q.Seq.d/                         56   9e-08
VSA550 (VSA550Q) /CSM/VS/VSA5-C/VSA550Q.Seq.d/                         56   9e-08
VSD779 (VSD779Q) /CSM/VS/VSD7-D/VSD779Q.Seq.d/                         48   2e-05
VSJ675 (VSJ675Q) /CSM/VS/VSJ6-D/VSJ675Q.Seq.d/                         40   0.005

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX323538|AX323538.1 Sequence 26 from Patent WO0192565.             44   2e-04  2
AX277855|AX277855.1 Sequence 18 from Patent WO0177375.             44   2e-04  2
CE748996|CE748996.1 tigr-gss-dog-17000369585007 Dog Library Canis familiaris genomic, genomic survey sequence.    40   0.001  2
AC106112|AC106112.6 Rattus norvegicus clone CH230-134L16, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    40   0.002  2
BZ509657|BZ509657.1 BOMSK23TR BO_2_3_KB Brassica oleracea genomic clone BOMSK23, DNA sequence.    32   0.003  3
CE198350|CE198350.1 tigr-gss-dog-17000372200949 Dog Library Canis familiaris genomic, genomic survey sequence.    50   0.005  1
CE120051|CE120051.1 tigr-gss-dog-17000325900106 Dog Library Canis familiaris genomic, genomic survey sequence.    50   0.005  1
CE012061|CE012061.1 tigr-gss-dog-17000321038804 Dog Library Canis familiaris genomic, genomic survey sequence.    38   0.005  2
AC139061|AC139061.3 Mus musculus chromosome 16 clone RP23-125E11 map 16, WORKING DRAFT SEQUENCE, 23 unordered pieces.    40   0.006  2
CE001298|CE001298.1 tigr-gss-dog-17000320774441 Dog Library Canis familiaris genomic, genomic survey sequence.    38   0.006  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 40,136,930

 psg: 0.03  gvh: -0.36  alm: 0.92  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 2.11  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSE320 is nuc

>VSE320E.Seq
GAACTCACCACCAAATAAATAAATTTTTAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA