VSE294
Library VS
(Link to library)
Clone ID VSE294
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15130-1
Original site URL
Representative seq. ID VSE294Z
(Link to Original site)
Representative DNA sequence
>VSE294 (VSE294Q) /CSM/VS/VSE2-D/VSE294Q.Seq.d/
XXXXXXXXXXTGCGGCAAAGGTAGAGTTTGGATCGATCCAAATGAAATTGCTGATGTTGC
CATGGCCAACTCAAGAGATAACGTCCGTAGACTCATCGCTACCGGTTTCATCATGCGTAA
ACCAGTTGTTGTCCACTCTCGTTCACGTGCTAGAGAACACAACGCTGCCAAACGTTTAGG
TCGTCACAGAGGTGCTGGTAACAGATTAGGTACCCGTGAAGCTCGTCTCCCATCCAAGAT
TCTTTGGATCCGTAGAATCAGAGTTTTAAGAAGACTCTTAAAGAAATACCGTGAAGCCAA
GAAAATCGATAAACACTCTTACAGAGAGTTATACCTCAAAGCCAAAGGTAATGTCTTCAA
GAACAAACGTACCTTAATTGAATACATCGTCAAATCTAAGACTGAAAAATTAAGAGAAAA
ACTCATCCAAGATCAAGCTCAAGCCCGTAGAAACAAGAACAAATCAATCAAAGACAGACG
TGCTGCTAAATCTGCCGCCAAAGAAATTGTTTCATCAAACTAAAATAAATAATACAATCT
TTTTTAATATTTTATTTAGATTT
sequence update 2000. 6.30
Translated Amino Acid sequence
---GKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGR
HRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKN
KRTLIEYIVKSKTEKLREKLIQDQAQARRNKNKSIKDRRAAKSAAKEIVSSN*nk*ynlf
*yfi*i


Translated Amino Acid sequence (All Frames)
Frame A:
---aakvefgsiqmkllmlpwptqeitsvdsslpvsscvnqllstlvhvlenttlpnv*v
vtevlvtd*vpvklvshprffgsvesef*eds*rntvkprksintltesytskpkvmssr
tnvp*lntssnlrlkn*eknsskiklkpvetrtnqsktdvllnlppkklfhqtkinntif
fnilfrf


Frame B:
---rqr*sldrsk*nc*cchgqlkr*rp*thryrfhha*tsccplsftc*rtqrcqtfrs
sqrcw*qiryp*ssspiqdsldp*nqsfkktlkeip*sqenr*tllqrvipqsqr*clqe
qtyln*ihrqi*d*kikrkthprssssp*kqeqinqrqtcc*icrqrncfiklk*iiqsf
lifyld


Frame C:
---GKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGR
HRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKN
KRTLIEYIVKSKTEKLREKLIQDQAQARRNKNKSIKDRRAAKSAAKEIVSSN*nk*ynlf
*yfi*i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE294 (VSE294Q) /CSM/VS/VSE2-D/VSE294Q.Seq.d/ 1096 0.0
VSE552 (VSE552Q) /CSM/VS/VSE5-C/VSE552Q.Seq.d/ 1086 0.0
VSB326 (VSB326Q) /CSM/VS/VSB3-B/VSB326Q.Seq.d/ 1078 0.0
FC-AL16 (FC-AL16Q) /CSM/FC/FC-AL/FC-AL16Q.Seq.d/ 1078 0.0
VSI313 (VSI313Q) /CSM/VS/VSI3-A/VSI313Q.Seq.d/ 1072 0.0
VSH410 (VSH410Q) /CSM/VS/VSH4-A/VSH410Q.Seq.d/ 1068 0.0
VSJ481 (VSJ481Q) /CSM/VS/VSJ4-D/VSJ481Q.Seq.d/ 1065 0.0
VSI231 (VSI231Q) /CSM/VS/VSI2-B/VSI231Q.Seq.d/ 1045 0.0
VSF749 (VSF749Q) /CSM/VS/VSF7-C/VSF749Q.Seq.d/ 1045 0.0
VFM394 (VFM394Q) /CSM/VF/VFM3-D/VFM394Q.Seq.d/ 1037 0.0

own update 2002. 8.18
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L27657|L27657.1 Dictyostelium discoideum ribosomal protein (rpl19) mRNA, complete cds. 1063 0.0 1
X15383|X15383.1 Dictyostelium discoideum vegetative specific V14 gene. 969 0.0 2
AY160105|AY160105.1 Dictyostelium discoideum nucleotide exchange factor RasGEF P (gefP) gene, complete cds. 240 2e-59 1
CD450796|CD450796.1 USDA-FP_102775 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-38_C01 5', mRNA sequence. 44 3e-08 3
CB909744|CB909744.1 USDA-FP_101487 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-21_D06 5', mRNA sequence. 44 3e-08 3
CD450513|CD450513.1 USDA-FP_102476 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-34_C02 5', mRNA sequence. 44 4e-08 3
BQ914431|BQ914431.1 QHB10I15.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB10I15, mRNA sequence. 50 6e-08 3
CD451515|CD451515.1 USDA-FP_103756 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-47_E09 5', mRNA sequence. 44 7e-06 2
CA795361|CA795361.1 Cac_BL_2400 Cac_BL (Bean and Leaf from Amelonardo type Cacao) Theobroma cacao cDNA clone Cac_BL_2400 5', mRNA sequence. 34 9e-06 4
CA794909|CA794909.1 Cac_BL_1960 Cac_BL (Bean and Leaf from Amelonardo type Cacao) Theobroma cacao cDNA clone Cac_BL_1960 5', mRNA sequence. 34 9e-06 4
dna update 2003. 8.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF145429_1(EF145429|pid:none) Populus trichocarpa clone WS01124_... 182 4e-45
BT051421_1(BT051421|pid:none) Medicago truncatula clone MTYF1_F2... 182 4e-45
EF084901_1(EF084901|pid:none) Picea sitchensis clone WS0287_J15 ... 182 7e-45
BT071763_1(BT071763|pid:none) Picea sitchensis clone WS0453_A01 ... 182 7e-45
FJ362591_1(FJ362591|pid:none) Vernicia fordii 60s ribosome prote... 181 9e-45
AC152751_25(AC152751|pid:none) Medicago truncatula clone mth2-18... 181 1e-44
(Q9LUQ6) RecName: Full=60S ribosomal protein L19-2; &AB022217_2... 181 2e-44
(P49693) RecName: Full=60S ribosomal protein L19-3; &AF386993_1... 181 2e-44
BC126715_1(BC126715|pid:none) Bos taurus cDNA clone MGC:155204 I... 180 2e-44
AY389581_1(AY389581|pid:none) Hyacinthus orientalis ribosomal pr... 180 2e-44
protein update 2009. 7.30
PSORT

psg: 0.75 gvh: 0.31 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.02
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VSE294 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSE294Z
3' end seq.
>VSE294Z.Seq
----------TGCGGCAAAGGTAGAGTTTGGATCGATCCAAATGAAATTGCTGATGTTGC
CATGGCCAACTCAAGAGATAACGTCCGTAGACTCATCGCTACCGGTTTCATCATGCGTAA
ACCAGTTGTTGTCCACTCTCGTTCACGTGCTAGAGAACACAACGCTGCCAAACGTTTAGG
TCGTCACAGAGGTGCTGGTAACAGATTAGGTACCCGTGAAGCTCGTCTCCCATCCAAGAT
TCTTTGGATCCGTAGAATCAGAGTTTTAAGAAGACTCTTAAAGAAATACCGTGAAGCCAA
GAAAATCGATAAACACTCTTACAGAGAGTTATACCTCAAAGCCAAAGGTAATGTCTTCAA
GAACAAACGTACCTTAATTGAATACATCGTCAAATCTAAGACTGAAAAATTAAGAGAAAA
ACTCATCCAAGATCAAGCTCAAGCCCGTAGAAACAAGAACAAATCAATCAAAGACAGACG
TGCTGCTAAATCTGCCGCCAAAGAAATTGTTTCATCAAACTAAAATAAATAATACAATCT
TTTTTAATATTTTATTTAGATTT
Length of 3' end seq. 553
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -