>VSE277 (VSE277Q) /CSM/VS/VSE2-D/VSE277Q.Seq.d/
XXXXXXXXXXTCCTTTACTCTACTTTTGCACTCAAGGAAATTTAAATGGGTAACTTTGAT
CAAACCCTTGGTGTAAAGATCGTTCGGGNTGCCCTTTTAATCCCATGTAAAACAATTGCA
AATAATGCCGGTTTCGAAGGTTCTGTTGTCATTGGTCGTCTCTTTTCAAAACGTGNTTTC
GAATTTGGTTACAATGCTCAAAAAGGTGTTTTTGAAAATTTGGTTCAAGCTGGTATCATC
GAACCAACTAAAGTTTTTNGTACCGCTTTAATCGATGCTGCTTCTGTCGCTTCATTAATG
GCTACCACTGAAGCTTTGGTAGTTGAAATTTAAAAAGGTACCCCAATGCCCCAAATGCCC
CCCCAAATGGGTTTTTAAAAAATTTAAATAAAGGTTTTTAAAAAAAAAAAAAAAAAAAAA
AAAAATTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---lystfalkei*MGNFDQTLGVKIVRXALLIPCKTIANNAGFEGSVVIGRLFSKRXFE
FGYNAQKGVFENLVQAGIIEPTKVFXTALIDAASVASLMATTEALVVEI*kgtpmpqmpp
qmgf*ki*ikvfkkkkkkkkn*n*kkkkkkkkkkkkkk

Frame A:
---pllyfctqgnlng*l*snpwckdrsgcpfnpm*nnck*crfrrfcchwsslfktxfr
iwlqcskrcf*kfgsswyhrtn*sfxyrfnrccfcrfingyh*sfgs*nlkrypnapnap
pngflknlnkgf*kkkkkkkklklkkkkkkkkkkkkkk


Frame B:
---lystfalkei*MGNFDQTLGVKIVRXALLIPCKTIANNAGFEGSVVIGRLFSKRXFE
FGYNAQKGVFENLVQAGIIEPTKVFXTALIDAASVASLMATTEALVVEI*kgtpmpqmpp
qmgf*ki*ikvfkkkkkkkkn*n*kkkkkkkkkkkkkk


Frame C:
---ftlllhsrkfkwvtlikplv*rsfgxpf*shvkqlqimpvskvllslvvsfqnvxsn
lvtmlkkvflkiwfklvssnqlkfxvpl*smlllslh*wlplklw*lkfkkvpqcpkcpp
kwvfkkfk*rflkkkkkkkkikikkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE277 (VSE277Q) /CSM/VS/VSE2-D/VSE277Q.Seq.d/                        712   0.0
VSE435 (VSE435Q) /CSM/VS/VSE4-B/VSE435Q.Seq.d/                        498   e-140
SLB321 (SLB321Q) /CSM/SL/SLB3-A/SLB321Q.Seq.d/                        498   e-140
SFH320 (SFH320Q) /CSM/SF/SFH3-A/SFH320Q.Seq.d/                        244   1e-63
FC-AO06 (FC-AO06Q) /CSM/FC/FC-AO/FC-AO06Q.Seq.d/                      145   7e-34
AHF874 (AHF874Q) /CSM/AH/AHF8-D/AHF874Q.Seq.d/                         36   0.47
VSI643 (VSI643Q) /CSM/VS/VSI6-B/VSI643Q.Seq.d/                         36   0.47
VSG413 (VSG413Q) /CSM/VS/VSG4-A/VSG413Q.Seq.d/                         36   0.47
VSF332 (VSF332Q) /CSM/VS/VSF3-B/VSF332Q.Seq.d/                         36   0.47
VHL553 (VHL553Q) /CSM/VH/VHL5-C/VHL553Q.Seq.d/                         36   0.47

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF359268|AF359268.1 Dictyostelium discoideum chaperonin 60 gene, complete cds; nuclear gene for mitochondrial product.   488  e-134  1
U72247|U72247.1 Dictyostelium discoideum chaperonin 60 (hspA) mRNA, complete cds.   488  e-134  1
AF300645|AF300645.1 Lactobacillus acidophilus groESL operon, complete sequence.    44  0.018  2
BB679802|BB679802.1 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4922505B09, 3' end partial sequence.    50  0.025  1
AC112869|AC112869.5 Rattus norvegicus clone CH230-233P5, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48  0.100  1
BX171555|BX171555.1 Danio rerio genomic clone DKEY-173H8, genomic survey sequence.    48  0.100  1
BY584378|BY584378.1 Mus musculus bone marrow mast cells cDNA, RIKEN full-length enriched library, clone:K1C0008L20, 3' end partial sequence.    28  0.38  4
BM476577|BM476577.1 AGENCOURT_6476444 NIH_MGC_85 Homo sapiens cDNA clone IMAGE:5553570 5', mRNA sequence.    40  0.39  2
BI341663|BI341663.1 369173 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence.    46  0.39  1
AC111368|AC111368.5 Rattus norvegicus clone CH230-85C6, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46  0.39  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF359268_1(AF359268|pid:none) Dictyostelium discoideum chaperoni...   174   1e-42
CR932188_1(CR932188|pid:none) Paramecium tetraurelia, hsp60, put...   118   6e-26
AB048353_1(AB048353|pid:none) Paramecium caudatum mRNA for hsp60...   117   1e-25
CR932193_1(CR932193|pid:none) Paramecium tetraurelia, hsp60, put...   117   1e-25
(Q05046) RecName: Full=Chaperonin CPN60-2, mitochondrial; AltNam...   112   6e-24
L21007_1(L21007|pid:none) Corn nuclear-encoded mitochondrial cha...   111   7e-24
(P29185) RecName: Full=Chaperonin CPN60-1, mitochondrial; AltNam...   111   7e-24
S26582(S26582) chaperonin hsp60 - maize  &Z12114_1(Z12114|pid:no...   111   7e-24
S20875(S20875;S34488;S19844) chaperonin hsp60 precursor - maize ...   111   7e-24
AF065609_1(AF065609|pid:none) Toxoplasma gondii strain 76K heat ...   111   1e-23

 psg: 0.79  gvh: 0.50  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VSE277 is cyt

>VSE277Z.Seq
----------TCCTTTACTCTACTTTTGCACTCAAGGAAATTTAAATGGGTAACTTTGAT
CAAACCCTTGGTGTAAAGATCGTTCGGGNTGCCCTTTTAATCCCATGTAAAACAATTGCA
AATAATGCCGGTTTCGAAGGTTCTGTTGTCATTGGTCGTCTCTTTTCAAAACGTGNTTTC
GAATTTGGTTACAATGCTCAAAAAGGTGTTTTTGAAAATTTGGTTCAAGCTGGTATCATC
GAACCAACTAAAGTTTTTNGTACCGCTTTAATCGATGCTGCTTCTGTCGCTTCATTAATG
GCTACCACTGAAGCTTTGGTAGTTGAAATTTAAAAAGGTACCCCAATGCCCCAAATGCCC
CCCCAAATGGGTTTTTAAAAAATTTAAATAAAGGTTTTTAAAAAAAAAAAAAAAAAAAAA
AAAAATTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA