>VSE243 (VSE243Q) /CSM/VS/VSE2-B/VSE243Q.Seq.d/
GATTTAGGTTCTTTCAATCAAGCTTTGGAACAAAATTCAGACATTTTCAAATCAGATCAA
ACTTTTACCCTTGTTCAAAGATTACGTTCAAATGTTATCAAAGCTGGACTTAAAAAATTA
AATACTGCTTACTCTAGAATCTCTTTCAATGATATTTGTACAAAATTAAAATTTGATGGT
ACTACTCAAGATATCATGTTTATTATTGCAAAGACTATTAAAGATGGTGTTATTGATGCA
ACTATAAATTATGAAGGTGGTTACCTCCAAAGTAGAGAAAATATTGATGCTTATTCAACT
CAAGAACCATTACATGCTTTCTCCAATAGAATTGATATTTGTTTAAAGATTCACAATGAT
TCCCTTAAAGCTATGAGATTCCATCCAGATTTAAATAAAGCTGAAACTGAAAAGATTGCT
GAAGTAGCCAAAACTATTAAAGAAGAAATGGAAAGACAAGCTGAAGAAAGCTCTGATAAT
GAAGGTGATTCTGATTTTTAAGTAAATAATAATAAAAAAAAAAAAAAAAAAAAAAAAATT
TATAAAAA

DLGSFNQALEQNSDIFKSDQTFTLVQRLRSNVIKAGLKKLNTAYSRISFNDICTKLKFDG
TTQDIMFIIAKTIKDGVIDATINYEGGYLQSRENIDAYSTQEPLHAFSNRIDICLKIHND
SLKAMRFHPDLNKAETEKIAEVAKTIKEEMERQAEESSDNEGDSDF*vnnnkkkkkkkki
yk

Frame A:
DLGSFNQALEQNSDIFKSDQTFTLVQRLRSNVIKAGLKKLNTAYSRISFNDICTKLKFDG
TTQDIMFIIAKTIKDGVIDATINYEGGYLQSRENIDAYSTQEPLHAFSNRIDICLKIHND
SLKAMRFHPDLNKAETEKIAEVAKTIKEEMERQAEESSDNEGDSDF*vnnnkkkkkkkki
yk


Frame B:
i*vlsiklwnkiqtfsnqikllplfkdyvqmlskldlkn*illtleslsmifvqn*nlmv
llkisclllqrllkmvllmql*imkvvtskvekilmliqlknhymlspielifv*rftmi
plkl*dsiqi*iklklkrllk*pkllkkkwkdklkkalimkvilifk*iiikkkkkkkkf
ik


Frame C:
frffqssfgtkfrhfqirsnfypcskitfkcyqswt*kikycll*nlfq*ylykiki*wy
ysryhvyyckdy*rwcy*cnykl*rwlppk*rky*clfnsrtitcflq*n*ylfkdsq*f
p*syeipsrfk*s*n*kdc*ssqny*rrngkts*rkl***r*f*flsk***kkkkkkknl
*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE243 (VSE243Q) /CSM/VS/VSE2-B/VSE243Q.Seq.d/                       1017   0.0
SFI222 (SFI222Q) /CSM/SF/SFI2-A/SFI222Q.Seq.d/                        906   0.0
AFC538 (AFC538Q) /CSM/AF/AFC5-B/AFC538Q.Seq.d/                        906   0.0
AFG104 (AFG104Q) /CSM/AF/AFG1-A/AFG104Q.Seq.d/                        904   0.0
VFJ116 (VFJ116Q) /CSM/VF/VFJ1-A/VFJ116Q.Seq.d/                        900   0.0
AFL859 (AFL859Q) /CSM/AF/AFL8-C/AFL859Q.Seq.d/                        900   0.0
SFD788 (SFD788Q) /CSM/SF/SFD7-D/SFD788Q.Seq.d/                        898   0.0
AFE606 (AFE606Q) /CSM/AF/AFE6-A/AFE606Q.Seq.d/                        898   0.0
VFD314 (VFD314Q) /CSM/VF/VFD3-A/VFD314Q.Seq.d/                        896   0.0
AHH621 (AHH621Q) /CSM/AH/AHH6-A/AHH621Q.Seq.d/                        862   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL358452|AL358452.3 Human DNA sequence from clone RP5-1111A8 on chromosome 1. Contains  part of the gene for a novel protein with fibronectin type III  domains, STSs and GSSs.    40  0.036  5
AK113782|AK113782.1 Ciona intestinalis cDNA, clone:cicl009c20, full insert sequence.    48  0.11  1
AP003362|AP003362.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 5/9.    30  0.23  10
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    34  0.25  8
CA303275|CA303275.1 taa06b12.x1 Hydra cDNA library Hydra magnipapillata cDNA 3' similar to SW:PSD3_MOUSE P14685 26S PROTEASOME REGULATORY SUBUNIT S3 ;, mRNA sequence.    38  0.30  2
AL732432|AL732432.3 Human DNA sequence from clone XXbac-92J3 on chromosome 6.    44  0.30  3
CA302693|CA302693.1 taa15g06.x1 Hydra cDNA library Hydra magnipapillata cDNA 3' similar to SW:PSD3_HUMAN O43242 26S PROTEASOME REGULATORY SUBUNIT S3 ;, mRNA sequence.    38  0.30  2
AC137514|AC137514.1 Mus musculus chromosome UNK clone RP24-511G20, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  0.36  5
BH663418|BH663418.1 BOMFA84TR BO_2_3_KB Brassica oleracea genomic clone BOMFA84, DNA sequence.    46  0.45  1
AC140025|AC140025.7 Medicago truncatula clone mth2-11i16, complete sequence.    36  0.61  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXD3) RecName: Full=26S proteasome non-ATPase regulatory subu...   329   3e-89
BC073593_1(BC073593|pid:none) Xenopus laevis MGC82894 protein, m...   147   2e-34
AK094206_1(AK094206|pid:none) Homo sapiens cDNA FLJ36887 fis, cl...   146   3e-34
AK145488_1(AK145488|pid:none) Mus musculus blastocyst blastocyst...   146   3e-34
D67025_1(D67025|pid:none) Homo sapiens mRNA for proteasome subun...   146   3e-34
BT059067_1(BT059067|pid:none) Salmo salar clone ssal-rgf-523-284...   146   3e-34
AB169643_1(AB169643|pid:none) Macaca fascicularis brain cDNA, cl...   146   3e-34
AK298411_1(AK298411|pid:none) Homo sapiens cDNA FLJ55739 complet...   146   3e-34
AK054611_1(AK054611|pid:none) Homo sapiens cDNA FLJ30049 fis, cl...   146   3e-34
I49504(I49504) Tum-P91A antigen - mouse  &M25149_1(M25149|pid:no...   146   3e-34

 psg: 0.75  gvh: 0.38  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for VSE243 is cyt

>VSE243E.Seq
GATTTAGGTTCTTTCAATCAAGCTTTGGAACAAAATTCAGACATTTTCAAATCAGATCAA
ACTTTTACCCTTGTTCAAAGATTACGTTCAAATGTTATCAAAGCTGGACTTAAAAAATTA
AATACTGCTTACTCTAGAATCTCTTTCAATGATATTTGTACAAAATTAAAATTTGATGGT
ACTACTCAAGATATCATGTTTATTATTGCAAAGACTATTAAAGATGGTGTTATTGATGCA
ACTATAAATTATGAAGGTGGTTACCTCCAAAGTAGAGAAAATATTGATGCTTATTCAACT
CAAGAACCATTACATGCTTTCTCCAATAGAATTGATATTTGTTTAAAGATTCACAATGAT
TCCCTTAAAGCTATGAGATTCCATCCAGATTTAAATAAAGCTGAAACTGAAAAGATTGCT
GAAGTAGCCAAAACTATTAAAGAAGAAATGGAAAGACAAGCTGAAGAAAGCTCTGATAAT
GAAGGTGATTCTGATTTTTAAGTAAATAATAATAAAAAAAAAAAAAAAAAAAAAAAAATT
TATAAAAA