>VSE232 (VSE232Q) /CSM/VS/VSE2-B/VSE232Q.Seq.d/
XXXXXXXXXXATCCCCAATTTCCAACCTTTACTCAATTGGGTGTTTTCCCTAAAGGTACT
TTCCTTGAAGTTAATGTTTCCNATNTTGGTTTTGTAACTCAAAATGGTAAAGTNGTTTGG
GGTAAAATGGCTCAAGTAACTAATAATCCTGAAAATGGTGGTTGTTTTAATGCCGTTTTT
TTTGTTTAAAAAATTTATATTTTTTTTTTTTTAAAATTTTTTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAATAAAAAAAAAGAAATAAAAAAAAAAAAATTAAAAATT
AAA

---PQFPTFTQLGVFPKGTFLEVNVSXXGFVTQNGKVVWGKMAQVTNNPENGGCFNAVFF
V*kiyiffflkfflkkkkkkkkkkkrnkkkeikkkklkik

Frame A:
---spisnlysigcfp*ryfp*s*cfxxwfcnskw*sxlg*ngssn**s*kwwlf*crff
clknlyffffkiffkkkkkkkkkkkkk*kkrnkkkkikn*


Frame B:
---PQFPTFTQLGVFPKGTFLEVNVSXXGFVTQNGKVVWGKMAQVTNNPENGGCFNAVFF
V*kiyiffflkfflkkkkkkkkkkkrnkkkeikkkklkik


Frame C:
---pnfqpllnwvfslkvlslklmfpxlvl*lkmvkxfgvkwlk*liilkmvvvlmpffl
fkkfiffff*nff*kkkkkkkkkkkeikkkk*kkkn*kl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE232 (VSE232Q) /CSM/VS/VSE2-B/VSE232Q.Seq.d/                        309   1e-83
VSE517 (VSE517Q) /CSM/VS/VSE5-A/VSE517Q.Seq.d/                        226   1e-58
VSJ661 (VSJ661Q) /CSM/VS/VSJ6-C/VSJ661Q.Seq.d/                         32   4.5
VSG342 (VSG342Q) /CSM/VS/VSG3-B/VSG342Q.Seq.d/                         32   4.5
VSF238 (VSF238Q) /CSM/VS/VSF2-B/VSF238Q.Seq.d/                         32   4.5
VSC691 (VSC691Q) /CSM/VS/VSC6-D/VSC691Q.Seq.d/                         32   4.5
VHA193 (VHA193Q) /CSM/VH/VHA1-D/VHA193Q.Seq.d/                         32   4.5
VFN254 (VFN254Q) /CSM/VF/VFN2-C/VFN254Q.Seq.d/                         32   4.5
VFM768 (VFM768Q) /CSM/VF/VFM7-C/VFM768Q.Seq.d/                         32   4.5
VFM325 (VFM325Q) /CSM/VF/VFM3-B/VFM325Q.Seq.d/                         32   4.5

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX562118|BX562118.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse59g08_p1c. .    58  6e-05  1
BX559737|BX559737.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse45c12_p1c.    50  0.016  1
AI772551|AI772551.1 EST253651 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER3E5, mRNA sequence.    50  0.016  1
BG627169|BG627169.1 cC-esflcLEL16G21d1 Tomato flower library from a mixture of developmental stages Lycopersicon esculentum cDNA clone cC-esflcLEL16G21d1, mRNA sequence.    50  0.016  1
AI485132|AI485132.1 EST243436 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED7P7, mRNA sequence.    50  0.016  1
BG630355|BG630355.1 cC-esflcLEL35F18a1 Tomato flower library from a mixture of developmental stages Lycopersicon esculentum cDNA clone cC-esflcLEL35F18a1, mRNA sequence.    50  0.016  1
BG123792|BG123792.1 EST469438 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF3K11 5' sequence, mRNA sequence.    50  0.016  1
AW039325|AW039325.1 EST281582 tomato mixed elicitor, BTI Lycopersicon esculentum cDNA clone cLET9K24, mRNA sequence.    50  0.016  1
AI774601|AI774601.1 EST255701 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER12F16, mRNA sequence.    50  0.016  1
BG642558|BG642558.1 EST510752 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF16B2, mRNA sequence.    46  0.24  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GN8) RecName: Full=Ribosome biogenesis protein NSA2 homolog;       94   2e-18
DQ213395_1(DQ213395|pid:none) Taeniopygia guttata clone 0064P000...    85   7e-16
EF070567_1(EF070567|pid:none) Maconellicoccus hirsutus clone WHM...    85   9e-16
AY826168_1(AY826168|pid:none) Aedes albopictus clone AL_421 hair...    84   2e-15
AF275672_1(AF275672|pid:none) Aedes triseriatus clone ATE-001 un...    84   2e-15
(Q0UV95) RecName: Full=Ribosome biogenesis protein NSA2;               84   2e-15
AJ719405_1(AJ719405|pid:none) Gallus gallus mRNA for hypothetica...    84   2e-15
BC073255_1(BC073255|pid:none) Xenopus laevis cDNA clone MGC:8060...    84   2e-15
BC135791_1(BC135791|pid:none) Xenopus tropicalis TGF beta-induci...    84   2e-15
(Q9QYU7) RecName: Full=Ribosome biogenesis protein NSA2 homolog;...    83   3e-15

 psg: 0.88  gvh: 0.42  alm: 0.51  top: 0.47  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSE232 is cyt

>VSE232Z.Seq
----------ATCCCCAATTTCCAACCTTTACTCAATTGGGTGTTTTCCCTAAAGGTACT
TTCCTTGAAGTTAATGTTTCCNATNTTGGTTTTGTAACTCAAAATGGTAAAGTNGTTTGG
GGTAAAATGGCTCAAGTAACTAATAATCCTGAAAATGGTGGTTGTTTTAATGCCGTTTTT
TTTGTTTAAAAAATTTATATTTTTTTTTTTTTAAAATTTTTTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAATAAAAAAAAAGAAATAAAAAAAAAAAAATTAAAAATT
AAA