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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSE212
Library VS
(Link to library)
Clone ID VSE212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12590-1
Original site URL
Representative seq. ID VSE212Z
(Link to Original site)
Representative DNA sequence 
>VSE212 (VSE212Q) /CSM/VS/VSE2-A/VSE212Q.Seq.d/
XXXXXXXXXXTGAAATTAAAACAAAATTAAGTGATAAAAAGTTTATTTCGGAAAGATCAT
TTGGTAATTTTAAANGATATTTAGATTTAACAAAAGTTTTATATCAATTGGATTTAAATT
CAATCAATACTCAATTTGAAAATGGTTTTTTAACAATTACAATCAATAAGAAATTACATT
ACTCAAATACAATTAAAATTAATTTAAATTAACCNTTGGTCCCCTTTATTTTCATTCTTT
ACAAATACATGTATAATATTAATAAATTTTAATAAATTATTATTTCTTTAAAATTATTTA
AATAAAAAACTTTAAAAAAGGTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
sequence update 2000. 6.30
Translated Amino Acid sequence 
---EIKTKLSDKKFISERSFGNFKXYLDLTKVLYQLDLNSINTQFENGFLTITINKKLHY
SNTIKINLN*plvpfifilykymyninkf**iiislklfk*ktlkkvnkkkkkkkkkkkk
k
Translated Amino Acid sequence (All Frames) 
Frame A:
---EIKTKLSDKKFISERSFGNFKXYLDLTKVLYQLDLNSINTQFENGFLTITINKKLHY
SNTIKINLN*plvpfifilykymyninkf**iiislklfk*ktlkkvnkkkkkkkkkkkk
k


Frame B:
---klkqn*vikslfrkdhlvilxdi*i*qkfyinwi*iqsilnlkmvf*qlqsirnyit
qiqlkli*inxwsplfsfftntciilinfnkllfl*nylnkkl*kr*ikkkkkkkkkkkk
k


Frame C:
---n*nkik**kvyfgkiiw*f*xifrfnksfisigfkfnqysi*kwffnnynq*eitll
kyn*n*fkltxgplyfhslqihv*y**ilinyyffkii*iknfkkgk*kkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE212 (VSE212Q) /CSM/VS/VSE2-A/VSE212Q.Seq.d/                        476   e-133
VSH432 (VSH432Q) /CSM/VS/VSH4-B/VSH432Q.Seq.d/                        428   e-119
VSJ631 (VSJ631Q) /CSM/VS/VSJ6-B/VSJ631Q.Seq.d/                        371   e-102
VSB614 (VSB614Q) /CSM/VS/VSB6-A/VSB614Q.Seq.d/                        363   1e-99
VSE747 (VSE747Q) /CSM/VS/VSE7-B/VSE747Q.Seq.d/                        353   1e-96
VSE504 (VSE504Q) /CSM/VS/VSE5-A/VSE504Q.Seq.d/                        353   1e-96
SSE777 (SSE777Q) /CSM/SS/SSE7-D/SSE777Q.Seq.d/                        353   1e-96
SHK484 (SHK484Q) /CSM/SH/SHK4-D/SHK484Q.Seq.d/                        353   1e-96
VSF515 (VSF515Q) /CSM/VS/VSF5-A/VSF515Q.Seq.d/                        339   2e-92
VSI828 (VSI828Q) /CSM/VS/VSI8-B/VSI828Q.Seq.d/                        335   3e-91
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116955|AC116955.2 Dictyostelium discoideum chromosome 2 map 5455881-5481449 strain AX4, complete sequence.   428  e-116  1
AC116967|AC116967.2 Dictyostelium discoideum chromosome 2 map 5481549-5500786 strain AX4, complete sequence.   367  2e-96  2
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.   283  6e-71  2
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.   283  3e-69  3
AC116550|AC116550.2 Dictyostelium discoideum chromosome 2 map 375056-387392 strain AX4, complete sequence.   139  3e-34  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    64  2e-07  8
AL597764|AL597764.1 Homo sapiens mRNA; EST DKFZp313D1316_r1  (from clone DKFZp313D1316).    48  0.075  1
AC131340|AC131340.2 Mus musculus chromosome UNK clone RP23-472G22, WORKING DRAFT SEQUENCE, 6 unordered pieces.    48  0.075  1
BX324219|BX324219.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-265I11.    44  0.14  5
AC125091|AC125091.3 Mus musculus chromosome 18 clone RP24-165P5, complete sequence.    46  0.20  4
dna update 2003. 8.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8MPA7) RecName: Full=Small heat shock protein hspG5;  &AC11695...   125   5e-28
(Q86KF5) RecName: Full=Small heat shock protein hspG9;  &AC11696...   123   2e-27
AC116967_4(AC116967|pid:none) Dictyostelium discoideum chromosom...   121   7e-27
AC116967_6(AC116967|pid:none) Dictyostelium discoideum chromosom...   120   2e-26
(Q550E9) RecName: Full=Small heat shock protein hspG8;                117   1e-25
AC116550_9(AC116550|pid:none) Dictyostelium discoideum chromosom...    95   9e-19
(Q551G1) RecName: Full=Small heat shock protein hspG4;                 95   9e-19
(Q552K9) RecName: Full=Small heat shock protein hspG2;                 87   2e-16
(Q86I25) RecName: Full=Small heat shock protein hspG1;  &AC11630...    77   1e-13
CP000356_380(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ...    36   0.37
protein update 2009. 7.30
PSORT 

 psg: 0.67  gvh: 0.34  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for VSE212 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSE212Z
3' end seq. 
>VSE212Z.Seq
----------TGAAATTAAAACAAAATTAAGTGATAAAAAGTTTATTTCGGAAAGATCAT
TTGGTAATTTTAAANGATATTTAGATTTAACAAAAGTTTTATATCAATTGGATTTAAATT
CAATCAATACTCAATTTGAAAATGGTTTTTTAACAATTACAATCAATAAGAAATTACATT
ACTCAAATACAATTAAAATTAATTTAAATTAACCNTTGGTCCCCTTTATTTTCATTCTTT
ACAAATACATGTATAATATTAATAAATTTTAATAAATTATTATTTCTTTAAAATTATTTA
AATAAAAAACTTTAAAAAAGGTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
Length of 3' end seq. 356
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -