>VSE204 (VSE204Q) /CSM/VS/VSE2-A/VSE204Q.Seq.d/
XXXXXXXXXXTTACATGTTTGTAGAAATGTTGCACCAATTATGAGAAAACAAAAGTCTGG
TTTAATTATGAATGTTGCATCAGTGTTAGCTTGGTTCACAGTTGGTGAATATGCAGCATA
TAATACTACTAAATATGCATTAAATGGATTAACCTCGACATTAGGCCAAGAATTAGCACC
ATTTGGTATTAAAGTAGTATTATTATCACCAAGTGGTTTCAAAACTAATTTCGTAAATGA
TAATATGGAATCTGCTAAAGTTAGAATTGAAGGTTACAAAACTGATGACCTTGCAAAATG
GTTAGATGGTATTGTAAATGAAGCTAGAGGTGATCCAGATAAATTTGCTGATGCAGTTAT
CGCTGTCTCAAAAATGGATGAAGTCCCTAAGAACCTATTCTTAGGAACAGCAGCTGTTAA
TTGGATGGAAGGAGAATTTAAAAAACAAATTGATGAATTAAAATTAAATCATGAATTAAC
AATTTCAACTGATTTCCCAAATTTACCACCATTATAAATTAAATTAATTAAATAAAATAA
AAACAAATAAAAACAAAGA

---HVCRNVAPIMRKQKSGLIMNVASVLAWFTVGEYAAYNTTKYALNGLTSTLGQELAPF
GIKVVLLSPSGFKTNFVNDNMESAKVRIEGYKTDDLAKWLDGIVNEARGDPDKFADAVIA
VSKMDEVPKNLFLGTAAVNWMEGEFKKQIDELKLNHELTISTDFPNLPPL*iklik*nkn
k*kqr

Frame A:
---ymfvemlhql*enkslv*l*mlhqc*lgsqlvnmqhiillnmh*md*prh*akn*hh
lvlk*yyyhqvvsklis*miiwnllklelkvtklmtlqng*mvl*mkleviqinllmqls
lsqkwmkslrtys*eqqlligwkenlknklmn*n*imn*qfqlisqiyhhykln*lnkik
tnknk


Frame B:
---tcl*kcctnyektkvwfnyeccisvslvhsw*icsi*yy*icikwinldirpristi
wy*ssiiitkwfqn*frk**ygic*s*n*rlqn**pckmvrwyck*s*r*sr*ic*csyr
clkng*sp*epilrnssc*ldgrri*ktn**ikiks*innfn*fpkfttiin*in*ik*k
qiktk


Frame C:
---HVCRNVAPIMRKQKSGLIMNVASVLAWFTVGEYAAYNTTKYALNGLTSTLGQELAPF
GIKVVLLSPSGFKTNFVNDNMESAKVRIEGYKTDDLAKWLDGIVNEARGDPDKFADAVIA
VSKMDEVPKNLFLGTAAVNWMEGEFKKQIDELKLNHELTISTDFPNLPPL*iklik*nkn
k*kqr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE204 (VSE204Q) /CSM/VS/VSE2-A/VSE204Q.Seq.d/                        997   0.0
FC-BR12 (FC-BR12Q) /CSM/FC/FC-BR/FC-BR12Q.Seq.d/                      989   0.0
FC-BB22 (FC-BB22Q) /CSM/FC/FC-BB/FC-BB22Q.Seq.d/                      989   0.0
FC-400 (FC-400Q) /CSM/CG/CG-FC/FC-400Q.Seq.d/                         989   0.0
SSF560 (SSF560Q) /CSM/SS/SSF5-C/SSF560Q.Seq.d/                        959   0.0
VSD554 (VSD554Q) /CSM/VS/VSD5-C/VSD554Q.Seq.d/                        914   0.0
VFD350 (VFD350Q) /CSM/VF/VFD3-C/VFD350Q.Seq.d/                        912   0.0
VFC431 (VFC431Q) /CSM/VF/VFC4-B/VFC431Q.Seq.d/                        868   0.0
SSD133 (SSD133Q) /CSM/SS/SSD1-B/SSD133Q.Seq.d/                         42   0.009
VSG364 (VSG364Q) /CSM/VS/VSG3-C/VSG364Q.Seq.d/                         40   0.035

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ691151|AZ691151.1 ENTJM75TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.007  1
AZ685621|AZ685621.1 ENTII57TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.007  1
BH151093|BH151093.1 ENTQM05TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.007  1
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    48  0.028  4
BX571724|BX571724.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-165B19.    48  0.12  1
BX322568|BX322568.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-38N4.    48  0.12  2
AC138153|AC138153.2 Danio rerio clone CH211-228N13 strain Tue, WORKING DRAFT SEQUENCE, 3 ordered pieces.    48  0.12  1
AL928657|AL928657.12 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-194I10.    48  0.12  1
AW421271|AW421271.1 fj89c10.y1 zebrafish gridded kidney Danio rerio cDNA 5', mRNA sequence.    46  0.46  1
CD580733|CD580733.1 RK009A1C01.T3 Zebrafish Kidney Marrow cDNA library Danio rerio cDNA clone RK009A1C01 5', mRNA sequence.    46  0.46  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116960_60(AC116960|pid:none) Dictyostelium discoideum chromoso...   178   1e-43
AC117072_2(AC117072|pid:none) Dictyostelium discoideum chromosom...   115   6e-25
CP000271_1061(CP000271|pid:none) Burkholderia xenovorans LB400 c...    97   4e-19
CP000629_710(CP000629|pid:none) Agrobacterium radiobacter K84 ch...    96   7e-19
CP000094_3274(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    95   1e-18
CP000750_260(CP000750|pid:none) Kineococcus radiotolerans SRS302...    94   3e-18
CP000680_2191(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    93   4e-18
CP000394_1772(CP000394|pid:none) Granulibacter bethesdensis CGDN...    92   7e-18
CP001157_3143(CP001157|pid:none) Azotobacter vinelandii DJ, comp...    91   2e-17
CP000628_523(CP000628|pid:none) Agrobacterium radiobacter K84 ch...    91   2e-17

 psg: 0.64  gvh: 0.46  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VSE204 is mit

>VSE204Z.Seq
----------TTACATGTTTGTAGAAATGTTGCACCAATTATGAGAAAACAAAAGTCTGG
TTTAATTATGAATGTTGCATCAGTGTTAGCTTGGTTCACAGTTGGTGAATATGCAGCATA
TAATACTACTAAATATGCATTAAATGGATTAACCTCGACATTAGGCCAAGAATTAGCACC
ATTTGGTATTAAAGTAGTATTATTATCACCAAGTGGTTTCAAAACTAATTTCGTAAATGA
TAATATGGAATCTGCTAAAGTTAGAATTGAAGGTTACAAAACTGATGACCTTGCAAAATG
GTTAGATGGTATTGTAAATGAAGCTAGAGGTGATCCAGATAAATTTGCTGATGCAGTTAT
CGCTGTCTCAAAAATGGATGAAGTCCCTAAGAACCTATTCTTAGGAACAGCAGCTGTTAA
TTGGATGGAAGGAGAATTTAAAAAACAAATTGATGAATTAAAATTAAATCATGAATTAAC
AATTTCAACTGATTTCCCAAATTTACCACCATTATAAATTAAATTAATTAAATAAAATAA
AAACAAATAAAAACAAAGA