>VSE184 (VSE184Q) /CSM/VS/VSE1-D/VSE184Q.Seq.d/
XXXXXXXXXXTGGAAATTCAAGTTGAACAATTGAGTGGAAAATATATCTTTATTTGTACT
CATAAACAAAAAGATCAACGTTGTGGTTATTGTGGTCCAATTTTAGTCGATCAATTAAGA
GATCAAATTAAAGAAAGATCTTTGGAAAAGGAAATTCAAGTATTTGGTACCTCTCATGTC
GGTGGTCATAAATATGCTGGTAACGTTTTGGTTTTCCCACCAGGTAACTGGTATGGTTAT
GTAACTCCTGATGATGTCTCCTCAATCCTTGATTCNACAATCTCTGGTGAAGTCATTCAA
AAACTTCATCGTGGTACTATGGGTACTGAAATCCCAAAAAAAGAAAAAAAACATTAAAAA
AAATATTATCATTATAATAAATAAATTTTAAAAAAAAAAATAATTTAAATAAAAAAAAAA
TAATAATAATTTAAAATTTAAAATTA

---EIQVEQLSGKYIFICTHKQKDQRCGYCGPILVDQLRDQIKERSLEKEIQVFGTSHVG
GHKYAGNVLVFPPGNWYGYVTPDDVSSILDSTISGEVIQKLHRGTMGTEIPKKEKKH*kk
yyhynk*ilkkkii*ikkk***fki*n

Frame A:
---gnss*tiewkiylylys*tkrstlwllwsnfsrsikrsn*rkifgkgnssiwylscr
ws*icw*rfgfptr*lvwlcns**cllnp*fxnlw*shsktsswyygy*npkkrkktlkk
ilsl**infkkknnlnkkkiiii*nlkl


Frame B:
---EIQVEQLSGKYIFICTHKQKDQRCGYCGPILVDQLRDQIKERSLEKEIQVFGTSHVG
GHKYAGNVLVFPPGNWYGYVTPDDVSSILDSTISGEVIQKLHRGTMGTEIPKKEKKH*kk
yyhynk*ilkkkii*ikkk***fki*n


Frame C:
---kfklnn*venislfvlinkkinvvvivvqf*sin*eiklkkdlwkrkfkylvplmsv
vinmlvtfwfshqvtgmvm*llmmspqslixqslvksfknfivvlwvlksqkkkknikkn
iiiiinkf*kkk*fk*kknnnnlkfki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE184 (VSE184Q) /CSM/VS/VSE1-D/VSE184Q.Seq.d/                        638   0.0
FC-AC21 (FC-AC21Q) /CSM/FC/FC-AC/FC-AC21Q.Seq.d/                      622   e-177
VFN183 (VFN183Q) /CSM/VF/VFN1-D/VFN183Q.Seq.d/                        617   e-176
VFM566 (VFM566Q) /CSM/VF/VFM5-C/VFM566Q.Seq.d/                        575   e-163
VFJ786 (VFJ786Q) /CSM/VF/VFJ7-D/VFJ786Q.Seq.d/                        547   e-155
VSG625 (VSG625Q) /CSM/VS/VSG6-B/VSG625Q.Seq.d/                        466   e-130
VFM654 (VFM654Q) /CSM/VF/VFM6-C/VFM654Q.Seq.d/                        347   9e-95
SLK711 (SLK711Q) /CSM/SL/SLK7-A/SLK711Q.Seq.d/                         36   0.43
CFJ201 (CFJ201Q) /CSM/CF/CFJ2-A/CFJ201Q.Seq.d/                         36   0.43
SSD772 (SSD772Q) /CSM/SS/SSD7-C/SSD772Q.Seq.d/                         34   1.7

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ623851|BQ623851.1 USDA-FP_00931 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00931 5', mRNA sequence.    46  2e-05  2
BH448346|BH448346.1 BOHAP42TR BOHA Brassica oleracea genomic clone BOHAP42, DNA sequence.    48  0.093  1
CC014781|CC014781.1 PUDJG61TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa224K01, DNA sequence.    46  0.37  1
CC403294|CC403294.1 PUHSL89TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa523P10, DNA sequence.    46  0.37  1
BX510319|BX510319.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-221E5.    44  1.4  1
AL980994|AL980994.1 Danio rerio genomic clone DKEY-36C19, genomic survey sequence.    44  1.4  1
BX005425|BX005425.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-7O6.    44  2.3  3
AK104276|AK104276.1 Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A01, full insert sequence.    42  5.7  1
BQ802802|BQ802802.1 WHE2830_B09_C18ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA clone WHE2830_B09_C18, mRNA sequence.    42  5.7  1
BQ364376|BQ364376.1 MR4-ST0125-210600-013-e08 ST0125 Homo sapiens cDNA, mRNA sequence.    42  5.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY085366_1(AY085366|pid:none) Arabidopsis thaliana clone 148108 ...   121   7e-27
AY070744_1(AY070744|pid:none) Arabidopsis thaliana AT5g40510/MNF...   121   7e-27
AY058067_1(AY058067|pid:none) Arabidopsis thaliana AT3g27570/MMJ...   121   9e-27
AB025626_11(AB025626|pid:none) Arabidopsis thaliana genomic DNA,...   121   9e-27
AK317244_1(AK317244|pid:none) Arabidopsis thaliana AT3G27570 mRN...   121   9e-27
AK228503_1(AK228503|pid:none) Arabidopsis thaliana mRNA for sucr...   121   9e-27
BT052503_1(BT052503|pid:none) Medicago truncatula clone MTYFD_FE...   120   2e-26
S51376(S51376) sucrose cleavage protein - potato  &S74161_1(S741...   119   4e-26
EU965601_1(EU965601|pid:none) Zea mays clone 287339 sucrose clea...   115   4e-25
BT036152_1(BT036152|pid:none) Zea mays full-length cDNA clone ZM...   115   4e-25

 psg: 0.75  gvh: 0.23  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSE184 is nuc

>VSE184Z.Seq
----------TGGAAATTCAAGTTGAACAATTGAGTGGAAAATATATCTTTATTTGTACT
CATAAACAAAAAGATCAACGTTGTGGTTATTGTGGTCCAATTTTAGTCGATCAATTAAGA
GATCAAATTAAAGAAAGATCTTTGGAAAAGGAAATTCAAGTATTTGGTACCTCTCATGTC
GGTGGTCATAAATATGCTGGTAACGTTTTGGTTTTCCCACCAGGTAACTGGTATGGTTAT
GTAACTCCTGATGATGTCTCCTCAATCCTTGATTCNACAATCTCTGGTGAAGTCATTCAA
AAACTTCATCGTGGTACTATGGGTACTGAAATCCCAAAAAAAGAAAAAAAACATTAAAAA
AAATATTATCATTATAATAAATAAATTTTAAAAAAAAAAATAATTTAAATAAAAAAAAAA
TAATAATAATTTAAAATTTAAAATTA