>VSE146 (VSE146Q) /CSM/VS/VSE1-B/VSE146Q.Seq.d/
XXXXXXXXXXGTTCGCTCAACATAGAGGCATCGAAGAGGGTAAAAGACGTCAGTTAATCG
ATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTACGTGTTCGTGAACAATGTA
AAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTTGTTTTGGGTAAAGGTTTCG
CTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAAATCACCTATTGTCATGCTG
AAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCTCTCATTGAACAAGATACAC
CAATTATCTTGATCATTTTAGATGATAGTAATTCTCCATTAATGAGAGTCGCCGCTGAAG
AAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTACAAATAATTCAACTTTGGCTAAAC
ATATCGCTCATGATACCATTTTAATTCCAAGTAATGGTATTTTAACTGCACTTTTAGCTG
CAATTCCATTACAATTATTAGCTTATGAAATGGCAATTTGTAAAAATATTGACCCAGATC
GTCCAAAAAATTTAGCCAAAACTGTAACAACTGATTAAAAAAAAAAAAAAAAAAA

---FAQHRGIEEGKRRQLIDSLHRLPTNLGMALRVREQCKAIAQKIYKKNSIFVLGKGFA
EPIAFEGALKIKEITYCHAEGYSGGALKHGPFALIEQDTPIILIILDDSNSPLMRVAAEE
VKARGAHTIVITNNSTLAKHIAHDTILIPSNGILTALLAAIPLQLLAYEMAICKNIDPDR
PKNLAKTVTTD*kkkkk

Frame A:
---FAQHRGIEEGKRRQLIDSLHRLPTNLGMALRVREQCKAIAQKIYKKNSIFVLGKGFA
EPIAFEGALKIKEITYCHAEGYSGGALKHGPFALIEQDTPIILIILDDSNSPLMRVAAEE
VKARGAHTIVITNNSTLAKHIAHDTILIPSNGILTALLAAIPLQLLAYEMAICKNIDPDR
PKNLAKTVTTD*kkkkk


Frame B:
---slnieaskrvkdvs*silfivyqqiwvwhyvfvnnvkqslkkfikriqslfwvkvsl
nqshlkvl*klkkspivmlkvivvvllnmvhslslnkihqls*sf*mivilh**esplkk
*kqevlilsslqiiqlwlnislmipf*fqvmvf*lhf*lqfhyny*lmkwqfvkiltqiv
qki*pkl*qlikkkkkk


Frame C:
---rst*rhrrg*ktsvnrfsssftnkfgygitcs*tm*snrsknl*kefnlcfg*rfr*
tnri*rcfen*rnhllsc*rl*wwcs*twsirsh*trytnyldhfr***fsinesrr*rs
kskrcsyyrhyk*fnfg*tyrs*yhfnsk*wyfnctfscnsitiisl*ngnl*ky*prss
kkfsqncnn*lkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE146 (VSE146Q) /CSM/VS/VSE1-B/VSE146Q.Seq.d/                       1122   0.0
SSD124 (SSD124Q) /CSM/SS/SSD1-A/SSD124Q.Seq.d/                       1110   0.0
AFM651 (AFM651Q) /CSM/AF/AFM6-C/AFM651Q.Seq.d/                       1074   0.0
AFO350 (AFO350Q) /CSM/AF/AFO3-C/AFO350Q.Seq.d/                       1059   0.0
CFI829 (CFI829Q) /CSM/CF/CFI8-B/CFI829Q.Seq.d/                       1057   0.0
SFE659 (SFE659Q) /CSM/SF/SFE6-C/SFE659Q.Seq.d/                       1049   0.0
AFK592 (AFK592Q) /CSM/AF/AFK5-D/AFK592Q.Seq.d/                       1031   0.0
CFF878 (CFF878Q) /CSM/CF/CFF8-D/CFF878Q.Seq.d/                       1025   0.0
CFC248 (CFC248Q) /CSM/CF/CFC2-B/CFC248Q.Seq.d/                       1025   0.0
SFL327 (SFL327Q) /CSM/SF/SFL3-B/SFL327Q.Seq.d/                        967   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ576997|BQ576997.1 PfESToab12e02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum 3D7 cDNA 5' similar to SW:GLMS_SYNY3 P72720 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] ;, mRNA sequence.    54  2e-11  4
BU497494|BU497494.1 PfESToab64b06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:GLMS_SYNY3 P72720 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] ;, mRNA sequence.    54  4e-11  4
BU496736|BU496736.1 PfESToab58b09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:GLMS_SYNY3 P72720 GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] ;, mRNA sequence.    54  2e-05  2
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    54  0.002  5
BI746638|BI746638.1 rm29g07.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:Q19130 Q19130 F07A11.2 PROTEIN. [1] ;, mRNA sequence.    36  0.023  2
AF529901|AF529901.1 Mimivirus putative glucosamine--fructose-6-phosphate aminotransferase (ORF13) gene, partial cds.    46  0.074  2
AC074241|AC074241.7 Homo sapiens chromosome 1 clone RP11-107P1, WORKING DRAFT SEQUENCE, 26 unordered pieces.    44  0.35  2
AC104038|AC104038.9 Homo sapiens chromosome 11, clone RP11-746C23, complete sequence.    46  0.49  1
BU305592|BU305592.1 603742002F1 CSEQCHN56 Gallus gallus cDNA clone ChEST641c1 5', mRNA sequence.    46  0.49  1
BU246042|BU246042.1 603781193F1 CSEQCHN34 Gallus gallus cDNA clone ChEST729j23 5', mRNA sequence.    46  0.49  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM910988_95(AM910988|pid:none) Plasmodium knowlesi strain H chro...   146   5e-34
CP000471_3411(CP000471|pid:none) Magnetococcus sp. MC-1, complet...   117   2e-25
CP000678_1551(CP000678|pid:none) Methanobrevibacter smithii ATCC...   114   3e-24
CP001078_293(CP001078|pid:none) Clostridium botulinum E3 str. Al...   111   1e-23
CP000102_1157(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...   111   1e-23
CP000103_312(CP000103|pid:none) Nitrosospira multiformis ATCC 25...   111   2e-23
CP000075_5116(CP000075|pid:none) Pseudomonas syringae pv. syring...   111   2e-23
CP000058_4964(CP000058|pid:none) Pseudomonas syringae pv. phaseo...   110   3e-23
CP000744_6265(CP000744|pid:none) Pseudomonas aeruginosa PA7, com...   110   3e-23
CP000094_5717(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...   110   4e-23

 psg: 0.46  gvh: 0.41  alm: 0.31  top: 0.47  tms: 0.07  mit: 0.24  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for VSE146 is mit

>VSE146Z.Seq
----------GTTCGCTCAACATAGAGGCATCGAAGAGGGTAAAAGACGTCAGTTAATCG
ATTCTCTTCATCGTTTACCAACAAATTTGGGTATGGCATTACGTGTTCGTGAACAATGTA
AAGCAATCGCTCAAAAAATTTATAAAAAGAATTCAATCTTTGTTTTGGGTAAAGGTTTCG
CTGAACCAATCGCATTTGAAGGTGCTTTGAAAATTAAAGAAATCACCTATTGTCATGCTG
AAGGTTATAGTGGTGGTGCTCTTAAACATGGTCCATTCGCTCTCATTGAACAAGATACAC
CAATTATCTTGATCATTTTAGATGATAGTAATTCTCCATTAATGAGAGTCGCCGCTGAAG
AAGTAAAAGCAAGAGGTGCTCATACTATCGTCATTACAAATAATTCAACTTTGGCTAAAC
ATATCGCTCATGATACCATTTTAATTCCAAGTAATGGTATTTTAACTGCACTTTTAGCTG
CAATTCCATTACAATTATTAGCTTATGAAATGGCAATTTGTAAAAATATTGACCCAGATC
GTCCAAAAAATTTAGCCAAAACTGTAACAACTGATTAAAAAAAAAAAAAAAAAAA