>VSE130 (VSE130Q) /CSM/VS/VSE1-B/VSE130Q.Seq.d/
AAAAAAATCCTCAATATAAAAAAATATTATTAAAAAATGAAAATTTTAAATTTATTTTTA
ATTATTTTATCTTTAGCCTTTTTATGTTTTGGTAATTTGGCAAATGCCAGATATATTGGA
TGCCAAACTTGTGAAACCTTAGTACAAGAAGCAATAGATTCCGTACCAAAATATGGAGTT
ACAAAACAAGAAATTAACGATAAGATTTACAGTTTATGTAACTCAATTCCAACACTAAGC
TCACGTTGTAAATTGATTGTTGCAATTTATGGAGAAACCTTAGTTGATTCTATATTAGAT
GGTGAAAGTGCTAACCAAACTTGTAAATTCCTTAATGAGTGTTATTAGAAATGTTAAGAC
CTCTCCAAAAACAACCACAAATTAATTAATTAATTAATAAATAAATAAATAAACAATAAT
TTATTTATTTCAAAAAA

kkilnikkyy*KMKILNLFLIILSLAFLCFGNLANARYIGCQTCETLVQEAIDSVPKYGV
TKQEINDKIYSLCNSIPTLSSRCKLIVAIYGETLVDSILDGESANQTCKFLNECY*kc*d
lsknnhklin*link*innnlfisk

Frame A:
kkilnikkyy*KMKILNLFLIILSLAFLCFGNLANARYIGCQTCETLVQEAIDSVPKYGV
TKQEINDKIYSLCNSIPTLSSRCKLIVAIYGETLVDSILDGESANQTCKFLNECY*kc*d
lsknnhklin*link*innnlfisk


Frame B:
kkssi*kniikk*kf*iyf*lfyl*pfyvlviwqmpdildaklvkp*ykkq*ipyqnmel
qnkkltirftvyvtqfqh*ahvvn*llqfmekp*lily*mvkvltklvnslmsvirnvkt
spktttn*lin**ink*tiiylfqk


Frame C:
knpqykkillknenfkfifnyfifslfmfw*fgkcqiywmpnl*nlstrsnrfrtkiwsy
ktrn*r*dlqfm*lnsntkltl*idccnlwrnls*fyirw*kc*pnl*ip**vllemlrp
lqkqpqin*link*inkq*fiyfkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG512 (VSG512Q) /CSM/VS/VSG5-A/VSG512Q.Seq.d/                        571   e-162
VSE130 (VSE130Q) /CSM/VS/VSE1-B/VSE130Q.Seq.d/                        571   e-162
VSD491 (VSD491Q) /CSM/VS/VSD4-D/VSD491Q.Seq.d/                        571   e-162
VSE786 (VSE786Q) /CSM/VS/VSE7-D/VSE786Q.Seq.d/                        539   e-152
VFM637 (VFM637Q) /CSM/VF/VFM6-B/VFM637Q.Seq.d/                         34   1.7
VFL375 (VFL375Q) /CSM/VF/VFL3-D/VFL375Q.Seq.d/                         34   1.7
VFJ328 (VFJ328Q) /CSM/VF/VFJ3-B/VFJ328Q.Seq.d/                         34   1.7
VFJ189 (VFJ189Q) /CSM/VF/VFJ1-D/VFJ189Q.Seq.d/                         34   1.7
VFI411 (VFI411Q) /CSM/VF/VFI4-A/VFI411Q.Seq.d/                         34   1.7
VFH889 (VFH889Q) /CSM/VF/VFH8-D/VFH889Q.Seq.d/                         34   1.7

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC136760|AC136760.1 Homo sapiens chromosome 8 clone RP11-971A1 map 8, LOW-PASS SEQUENCE SAMPLING.    42  5.6  1
AC105104|AC105104.7 Homo sapiens chromosome 18, clone RP11-909J22, complete sequence.    42  5.6  1
AC128119|AC128119.3 Rattus norvegicus clone CH230-415H17, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42  5.6  1
AC102046|AC102046.2 Mus musculus clone RP23-354I16, WORKING DRAFT SEQUENCE, 14 unordered pieces.    42  5.6  1
AC106979|AC106979.4 Rattus norvegicus clone CH230-205F12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  5.6  1
AC134978|AC134978.4 Homo sapiens chromosome 18, clone RP11-671C19, complete sequence.    42  5.6  1
AL162429|AL162429.12 Human DNA sequence from clone RP11-290M17 on chromosome 1.    42  5.6  1
AC026952|AC026952.4 Homo sapiens chromosome 18 clone RP11-459J8 map 18, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  7.7  2
AC079062|AC079062.5 Homo sapiens chromosome 18, clone RP11-476I17, complete sequence.    44  8.2  2
AL928625|AL928625.4 Mouse DNA sequence from clone RP24-528P17 on chromosome 4.    42    403  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...    46   5e-04
S21770(S21770)saposin-C - bovine                                       46   5e-04
(O13035) RecName: Full=Proactivator polypeptide; Contains:   Rec...    46   5e-04
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ...    45   0.001
BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ...    45   0.001
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA...    45   0.001
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu...    45   0.001
AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom...    42   0.007
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210...    38   0.13
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147...    38   0.13

 psg: 0.98  gvh: 0.74  alm: 0.39  top: 0.27  tms: 0.00  mit: 0.29  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSE130 is exc

>VSE130E.Seq
AAAAAAATCCTCAATATAAAAAAATATTATTAAAAAATGAAAATTTTAAATTTATTTTTA
ATTATTTTATCTTTAGCCTTTTTATGTTTTGGTAATTTGGCAAATGCCAGATATATTGGA
TGCCAAACTTGTGAAACCTTAGTACAAGAAGCAATAGATTCCGTACCAAAATATGGAGTT
ACAAAACAAGAAATTAACGATAAGATTTACAGTTTATGTAACTCAATTCCAACACTAAGC
TCACGTTGTAAATTGATTGTTGCAATTTATGGAGAAACCTTAGTTGATTCTATATTAGAT
GGTGAAAGTGCTAACCAAACTTGTAAATTCCTTAATGAGTGTTATTAGAAATGTTAAGAC
CTCTCCAAAAACAACCACAAATTAATTAATTAATTAATAAATAAATAAATAAACAATAAT
TTATTTATTTCAAAAAA