>VSE118 (VSE118Q) /CSM/VS/VSE1-A/VSE118Q.Seq.d/
XXXXXXXXXXAAACAAGGTCCAAATCTTTACGGTTTATTCGGTCGTAAATCAGGTTCCGT
CGCTGGTTATGCCTACTCTGACGCCAACAAAAACGCTGGTATCATGTGGGGTGAACAAAC
TCTCTTTGATTACTTAGAAAATCCAAAGAAATACATTCCAAAGACTAAAATGGCCTTTGC
TGGTTTCAAATCTGAACAAGATAGAGCTGATGTTGTCGCTTACCTTGAACAATCAACTAA
ATAAACACACAATATAAATAAACTACTCAACTAAATAAACACAATATAAATAACTTGATT
TCTTTTTTAACAATATAAA

---QGPNLYGLFGRKSGSVAGYAYSDANKNAGIMWGEQTLFDYLENPKKYIPKTKMAFAG
FKSEQDRADVVAYLEQSTK*thninklln*inti*it*flf*qyk

Frame A:
---nkvqiftvysvvnqvpslvmptltptktlvscgvnklslit*kiqrntfqrlkwpll
vsnlnkielmlsltlnnqlnkhti*inystk*tqyk*ldfffnni


Frame B:
---trskslrfirs*irfrrwlcll*rqqkrwyhvg*tnsl*llrkskeihskd*nglcw
fqi*tr*s*ccrlp*tin*intqyk*ttqlnkhninnlisflti*


Frame C:
---QGPNLYGLFGRKSGSVAGYAYSDANKNAGIMWGEQTLFDYLENPKKYIPKTKMAFAG
FKSEQDRADVVAYLEQSTK*thninklln*inti*it*flf*qyk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE118 (VSE118Q) /CSM/VS/VSE1-A/VSE118Q.Seq.d/                        613   e-175
VSB875 (VSB875Q) /CSM/VS/VSB8-D/VSB875Q.Seq.d/                        613   e-175
VSB594 (VSB594Q) /CSM/VS/VSB5-D/VSB594Q.Seq.d/                        613   e-175
VSH757 (VSH757Q) /CSM/VS/VSH7-C/VSH757Q.Seq.d/                        605   e-172
SSC532 (SSC532Q) /CSM/SS/SSC5-B/SSC532Q.Seq.d/                        605   e-172
VSI577 (VSI577Q) /CSM/VS/VSI5-D/VSI577Q.Seq.d/                        599   e-170
VSI528 (VSI528Q) /CSM/VS/VSI5-B/VSI528Q.Seq.d/                        563   e-160
VSH140 (VSH140Q) /CSM/VS/VSH1-B/VSH140Q.Seq.d/                        543   e-154
VHC784 (VHC784Q) /CSM/VH/VHC7-D/VHC784Q.Seq.d/                        543   e-154
VFH165 (VFH165Q) /CSM/VF/VFH1-C/VFH165Q.Seq.d/                        541   e-153

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.   440  e-144  5
U57896|U57896.1 Candida albicans cytochrome C gene (CYC1) gene, complete cds.    56  3e-04  1
AX536814|AX536814.1 Sequence 415 from Patent WO02064766.          56  3e-04  1
AK062980|AK062980.1 Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F02, full insert sequence.    48  3e-04  2
AY245197|AY245197.1 Diaeretiella rapae cytochrome c-like gene, partial sequence; nuclear gene for mitochondrial product.    46  0.013  2
AF047169|AF047169.1 Pachysolen tannophilus cytochrome c (CYC1) gene, complete cds.    48  0.065  1
AC127907|AC127907.3 Rattus norvegicus clone CH230-217J16, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  0.21  4
CD450123|CD450123.1 USDA-FP_102084 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-29_A04 5', mRNA sequence.    36  0.25  2
BB391328|BB391328.1 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230074A12, 3' end partial sequence, similar to ddbj:U70209 Mus musculus polycystic kidney disease 1 protein (Pkd1) mRNA.    46  0.26  1
BQ476298|BQ476298.1 curculio2h12.b Curculio glandium cDNA Curculio glandium cDNA clone curculio2h12 5', mRNA sequence.    46  0.26  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869N1) RecName: Full=Cytochrome c;  &AC117080_15(AC117080|pid:...   135   6e-31
(P00058) RecName: Full=Cytochrome c;  &CCCN(A00051)                   116   2e-25
(P00057) RecName: Full=Cytochrome c;  &CCCS(B00047;A00050)            115   5e-25
CCHB(A00031)cytochrome c [validated] - honeybee                       115   6e-25
(P00038) RecName: Full=Cytochrome c;  &AY601642_1(AY601642|pid:n...   115   6e-25
CCPY(A00013)cytochrome c - pigeon (tentative sequence)                114   8e-25
(P62897) RecName: Full=Cytochrome c, somatic;  &(P62898) RecName...   114   8e-25
CP001330_206(CP001330|pid:none) Micromonas sp. RCC299 chromosome...   114   1e-24
CCHP(A00008)cytochrome c - hippopotamus                               114   1e-24
(P00007) RecName: Full=Cytochrome c;                                  114   1e-24

 psg: 0.73  gvh: 0.42  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VSE118 is cyt

>VSE118Z.Seq
----------AAACAAGGTCCAAATCTTTACGGTTTATTCGGTCGTAAATCAGGTTCCGT
CGCTGGTTATGCCTACTCTGACGCCAACAAAAACGCTGGTATCATGTGGGGTGAACAAAC
TCTCTTTGATTACTTAGAAAATCCAAAGAAATACATTCCAAAGACTAAAATGGCCTTTGC
TGGTTTCAAATCTGAACAAGATAGAGCTGATGTTGTCGCTTACCTTGAACAATCAACTAA
ATAAACACACAATATAAATAAACTACTCAACTAAATAAACACAATATAAATAACTTGATT
TCTTTTTTAACAATATAAA