VSD873
Library VS
(Link to library)
Clone ID VSD873
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15128-1
Original site URL
Representative seq. ID VSD873Z
(Link to Original site)
Representative DNA sequence
>VSD873 (VSD873Q) /CSM/VS/VSD8-D/VSD873Q.Seq.d/
XXXXXXXXXXATCTAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAAC
TCCTCATTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTT
GCGACAAACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTA
CCCATTTAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAG
AAGAAGAAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACG
AAGTTAAAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCA
TCCCACAAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACA
AATAAACGTCAG
sequence update 2001. 3.22
Translated Amino Acid sequence
---SKMGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCT
HLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTI
PQIHVVDQKRYNKNTKKSNK*ts


Translated Amino Acid sequence (All Frames)
Frame A:
---SKMGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCT
HLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTI
PQIHVVDQKRYNKNTKKSNK*ts


Frame B:
---lkwvvleqrqskelpnsslrsitqdlpmtstltrelatnsprshqnv*etrllvsvp
i**dvllmvqsvvfltnykkkkekreittfhknqpskptklksivmlkkclnllwnsqps
hkstsltkrdttktpknqtnkrq


Frame C:
---*ngsc*nkdnqksfqtph*ealpktyq*lrh*qenlrqtrqdpiktfkkqdcwflyp
fnetyc*wsspwyflqitrrrkrker*lrstrishqnqrs*nrs*c*rna*iyfgipnhp
tnprr*pkeiqqkhqkikqinv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ410 (VSJ410Q) /CSM/VS/VSJ4-A/VSJ410Q.Seq.d/ 450 e-126
VSI470 (VSI470Q) /CSM/VS/VSI4-C/VSI470Q.Seq.d/ 450 e-126
VSD873 (VSD873Q) /CSM/VS/VSD8-D/VSD873Q.Seq.d/ 450 e-126
VSB711 (VSB711Q) /CSM/VS/VSB7-A/VSB711Q.Seq.d/ 450 e-126
VFG881 (VFG881Q) /CSM/VF/VFG8-D/VFG881Q.Seq.d/ 450 e-126
VFE119 (VFE119Q) /CSM/VF/VFE1-A/VFE119Q.Seq.d/ 450 e-126
SSK109 (SSK109Q) /CSM/SS/SSK1-A/SSK109Q.Seq.d/ 450 e-126
SLE319 (SLE319Q) /CSM/SL/SLE3-A/SLE319Q.Seq.d/ 450 e-126
VSG216 (VSG216Q) /CSM/VS/VSG2-A/VSG216Q.Seq.d/ 446 e-124
VSI273 (VSI273Q) /CSM/VS/VSI2-D/VSI273Q.Seq.d/ 442 e-123

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L35173|L35173.1 Dictyostelium discoideum ribosomal protein (rps17) gene, complete cds. 432 e-175 3
BQ434132|BQ434132.1 AGENCOURT_7808782 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:6069301 5', mRNA sequence. 50 1e-09 2
BG259081|BG259081.1 602379133F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE:4509608 5', mRNA sequence. 50 5e-09 2
AA390236|AA390236.1 CpEST.220 pSKIIminusCpIOWAsporoLib2 Cryptosporidium parvum cDNA 5' similar to 40S ribosomal protein S17A, mRNA sequence. 46 1e-05 3
CD477300|CD477300.1 eca01-12ms1-h08 Eca01 Eschscholzia californica cDNA clone eca01-12ms1-h08 5', mRNA sequence. 42 1e-05 2
CD476897|CD476897.1 eca01-7ms1-c05 Eca01 Eschscholzia californica cDNA clone eca01-7ms1-c05 5', mRNA sequence. 42 1e-05 2
CD477145|CD477145.1 eca01-14ms1-h01 Eca01 Eschscholzia californica cDNA clone eca01-14ms1-h01 5', mRNA sequence. 42 2e-05 2
AY087862|AY087862.1 Arabidopsis thaliana clone 39018 mRNA, complete sequence. 36 2e-05 3
H36865|H36865.1 14994 Lambda-PRL2 Arabidopsis thaliana cDNA clone 180B22T7, mRNA sequence. 36 1e-04 3
CD477559|CD477559.1 eca01-11ms1-h08 Eca01 Eschscholzia californica cDNA clone eca01-11ms1-h08 5', mRNA sequence. 40 2e-04 2
dna update 2003. 8.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU124942_1(EU124942|pid:none) Arenicola marina ribosomal protein... 158 5e-38
EU247177_1(EU247177|pid:none) Lycosa singoriensis clone LSsin973... 158 7e-38
AY857475_1(AY857475|pid:none) Suberites domuncula S17 mRNA, comp... 157 1e-37
DQ066305_1(DQ066305|pid:none) Ixodes scapularis isolate IS-6-12L... 156 2e-37
AF548334_1(AF548334|pid:none) Branchiostoma belcheri ribosomal p... 156 2e-37
(A5PK63) RecName: Full=40S ribosomal protein S17; &BC142374_1(B... 155 6e-37
BC091562_1(BC091562|pid:none) Danio rerio zgc:114188, mRNA (cDNA... 155 6e-37
AY892179_1(AY892179|pid:none) Synthetic construct Homo sapiens c... 154 7e-37
BT058153_1(BT058153|pid:none) Salmo salar clone Contig981 40S ri... 154 7e-37
(P08708) RecName: Full=40S ribosomal protein S17; &AB174364_1(A... 154 7e-37
protein update 2009. 7.30
PSORT

psg: 0.54 gvh: 0.22 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.03
nuc: 0.23 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: nuclear

>> prediction for VSD873 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSD873Z
3' end seq.
>VSD873Z.Seq
----------ATCTAAAATGGGTCGTGTTAGAACAAAGACAATCAAAAGAGCTTCCAAAC
TCCTCATTGAGAAGCATTACCCAAGACTTACCAATGACTTCGACACTAACAAGAGAACTT
GCGACAAACTCGCCAAGATCCCATCAAAACGTTTAAGAAACAAGATTGCTGGTTTCTGTA
CCCATTTAATGAGACGTATTGCTAATGGTCCAGTCCGTGGTATTTCTTACAAATTACAAG
AAGAAGAAAGAGAAAAGAGAGATAACTACGTTCCACAAGAATCAGCCATCAAAACCAACG
AAGTTAAAATCGATCGTGATGTTGAAGAAATGCTTAAATCTACTTTGGAATTCCCAACCA
TCCCACAAATCCACGTCGTTGACCAAAAGAGATACAACAAAAACACCAAAAAATCAAACA
AATAAACGTCAG
Length of 3' end seq. 422
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -