>VSD850 (VSD850Q) /CSM/VS/VSD8-C/VSD850Q.Seq.d/
CAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAACCGCTGTTGCC
ACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTA
TTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCA
AAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGA
CGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTT
GACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCC
TCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGT
CAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTTACGTTTCGGTATTGACTCTGT
CACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACXX
XXXXXXXX

QKQTKPAAATKAAPAKTAVATTKSKKVVKKGEKKIKTRTLFNALYTKNVKNFGTGFGVQP
KRDLTHFTHWPRYIKLQRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEA
SVKKARLLKIAEARAATPKGQAAPKAEKPVQHFTFRY*lchqinrkees*isrhcprc*-
--

Frame A:
QKQTKPAAATKAAPAKTAVATTKSKKVVKKGEKKIKTRTLFNALYTKNVKNFGTGFGVQP
KRDLTHFTHWPRYIKLQRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEA
SVKKARLLKIAEARAATPKGQAAPKAEKPVQHFTFRY*lchqinrkees*isrhcprc*-
--


Frame B:
knklnqllppkllqpkpllpppnqrkssrrvkrksklepystpytpktsktlvlvsvfnq
rei*lisltgqdtsnykdkdvfy*rd*rfhqqstnspvsltktplsiysny*intdqkkp
qsrkldy*kslkpvlplqkvkllqklknqsntlrfgidsvtkliekkkaklvviahdv--
-


Frame C:
ktn*tscchqscssqnrcchhqikesrqeg*kenqn*nliqrlihqkrqklwywfrcstk
erfnsfhslakihqitktktcfikeikgstnnqpihpcl*qkhrcpfiqiir*iqtrrsl
sqes*iienr*spcchskrsscsks*ktsptlyvsvltlspn*skrrkln*sslptml--
-

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD850 (VSD850Q) /CSM/VS/VSD8-C/VSD850Q.Seq.d/                       1066   0.0
VSK343 (VSK343Q) /CSM/VS/VSK3-B/VSK343Q.Seq.d/                       1061   0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/                       1053   0.0
VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/                       1051   0.0
VSI829 (VSI829Q) /CSM/VS/VSI8-B/VSI829Q.Seq.d/                       1021   0.0
VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/                       1003   0.0
VSK384 (VSK384Q) /CSM/VS/VSK3-D/VSK384Q.Seq.d/                        904   0.0
VSH242 (VSH242Q) /CSM/VS/VSH2-B/VSH242Q.Seq.d/                        823   0.0
FC-BA22 (FC-BA22Q) /CSM/FC/FC-BA/FC-BA22Q.Seq.d/                      779   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                         779   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   908  0.0  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56  2e-06  2
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    50  8e-06  2
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    50  8e-06  2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    54  0.002  1
BM879489|BM879489.1 kt96b07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:H11_CAEEL P10771 HISTONE H1.1. [2] TR:Q93901 ;, mRNA sequence.    48  0.11  1
BI742187|BI742187.1 kt91d02.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:H11_CAEEL P10771 HISTONE H1.1. [2] TR:Q93901 ;, mRNA sequence.    48  0.11  1
AL409408|AL409408.1 T7 end of clone AV0AA014G06 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    42  0.13  2
BF779702|BF779702.1 3232-81 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3232-81, mRNA sequence.    40  0.24  2
BM059302|BM059302.1 2243-04 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 2243-04, mRNA sequence.    40  0.26  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     201   2e-60
X82782_1(X82782|pid:none) D.melanogaster rpL7a gene.                  102   7e-27
(P46223) RecName: Full=60S ribosomal protein L7a;  &AE014298_931...   102   9e-27
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...    97   9e-27
AY925000_1(AY925000|pid:none) Acanthamoeba castellanii Rpl7A mRN...   100   1e-26
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...    99   1e-26
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei...    96   3e-26
A57416(A57416)ribosomal protein L7a, cytosolic - fruit fly (Dros...   100   4e-26
(O57592) RecName: Full=60S ribosomal protein L7a; AltName: Full=...    98   7e-26
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...    97   2e-25

 psg: 0.77  gvh: 0.33  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.16
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSD850 is mit

>VSD850F.Seq
CAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAACCGCTGTTGCC
ACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTA
TTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCA
AAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGA
CGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTT
GACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCC
TCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGT
CAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTTACGTTTCGGTATTGACTCTGT
CACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGAC--
--------