NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD844
Library VS
(Link to library)
Clone ID VSD844
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01814-1
Original site URL
Representative seq. ID VSD844F
(Link to Original site)
Representative DNA sequence 
>VSD844 (VSD844Q) /CSM/VS/VSD8-B/VSD844Q.Seq.d/
GAATTAAAACCATTAAGATCACCACCAAAAACTGAAGAAATTGATAATTAATTAATTAAT
TTTTTAAAAAAAAAAATTAAAAAAAAAAAAAAATTAAATTAAANTAAAAAATTNTTAAAN
TNTTAAANTNTTAAAAANTAAAAATTTTCCAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
ELKPLRSPPKTEEIDN*linflkkkikkkkkln*xkkxlxx*xxkx*kfskkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
ELKPLRSPPKTEEIDN*linflkkkikkkkkln*xkkxlxx*xxkx*kfskkk---


Frame B:
n*nh*dhhqklkkliin*lif*kkklkkkkn*ikxknx*xxkxlkxknfpkk---


Frame C:
iktikittkn*rn**lin*ffkkkn*kkkkiklx*kixkxlxx*kxkifqkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD844 (VSD844Q) /CSM/VS/VSD8-B/VSD844Q.Seq.d/                        129   1e-29
SSH786 (SSH786Q) /CSM/SS/SSH7-D/SSH786Q.Seq.d/                        129   1e-29
VSH279 (VSH279Q) /CSM/VS/VSH2-D/VSH279Q.Seq.d/                         42   0.003
SLK239 (SLK239Q) /CSM/SL/SLK2-B/SLK239Q.Seq.d/                         42   0.003
AFJ849 (AFJ849Q) /CSM/AF/AFJ8-C/AFJ849Q.Seq.d/                         42   0.003
SSH264 (SSH264Q) /CSM/SS/SSH2-C/SSH264Q.Seq.d/                         40   0.010
SHI148 (SHI148Q) /CSM/SH/SHI1-B/SHI148Q.Seq.d/                         40   0.010
VFL476 (VFL476Q) /CSM/VF/VFL4-D/VFL476Q.Seq.d/                         38   0.039
VFJ582 (VFJ582Q) /CSM/VF/VFJ5-D/VFJ582Q.Seq.d/                         38   0.039
SSH607 (SSH607Q) /CSM/SS/SSH6-A/SSH607Q.Seq.d/                         38   0.039
own update 2004. 8. 5
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   129  1e-26  1
AC110798|AC110798.4 Homo sapiens BAC clone RP11-645D12 from 4, complete sequence.    48  0.032  1
BX005314|BX005314.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-155D24.    48  0.032  1
AC120758|AC120758.4 Rattus norvegicus clone CH230-105H20, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    48  0.032  1
AC133776|AC133776.2 Rattus norvegicus clone CH230-189J5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48  0.032  1
AC106892|AC106892.3 Homo sapiens BAC clone RP11-55L3 from 4, complete sequence.    48  0.032  1
AC108816|AC108816.4 Mus musculus clone RP23-275J22, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  0.047  3
AC025551|AC025551.5 Homo sapiens chromosome 3 clone RP11-482K2, WORKING DRAFT SEQUENCE, 17 unordered pieces.    40  0.077  3
Z66514|Z66514.1 Caenorhabditis elegans cosmid K01A11.             44  0.079  2
AL929406|AL929406.10 Mouse DNA sequence from clone RP23-332H16 on chromosome 4.    42  0.083  2
dna update 2003. 8.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_89(AC116956|pid:none) Dictyostelium discoideum chromoso...    35   1.1
protein update 2009. 3.21
PSORT -
5' end seq. ID VSD844F
5' end seq. 
>VSD844F.Seq
GAATTAAAACCATTAAGATCACCACCAAAAACTGAAGAAATTGATAATTAATTAATTAAT
TTTTTAAAAAAAAAAATTAAAAAAAAAAAAAAATTAAATTAAANTAAAAAATTNTTAAAN
TNTTAAANTNTTAAAAANTAAAAATTTTCCAAAAAAAAAA----------
Length of 5' end seq. 160
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -