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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD833
Library VS
(Link to library)
Clone ID VSD833
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06605-1
Original site URL
Representative seq. ID VSD833P
(Link to Original site)
Representative DNA sequence 
>VSD833 (VSD833Q) /CSM/VS/VSD8-B/VSD833Q.Seq.d/
CATTTATCCAACCACACACACATATTCTATAAATACCACATAATCACCTTTTCAAAAAAG
TCAAATTTAATTAAAAAAAAAAATGACAACAATAGGACCAATTGAAAATGAAATTAAAGA
ATTATTAACAAAAGAATTAAATCCAATAAATTTAGAAATTATAAATGAAAGTTATATGCA
TAATGTACCAAAAGGATCTGAATCACATTTTAAAGTTAAAATTGTTTCTGAAAAATTTGA
AACTTTATCAATGATTGAACAACACAGATTAGTAAATGAAATTTTAAAAAATTTTATTGG
AAATGGTAAAATACATGCATTAAGTATAACATCAAGAACTCCAACTCAATGGAAAAAAAA
ATAATCAANCAAAAATCAATGTTGATGATGATAAATCACCATCTTGTAAAGGAGGTTTTG
GTAAATAAAAAAAGAAATAATXXXXXXXXXXCCACGGGTCCGCATTTATCCAACCACACA
CACATATTNTATAAATACCACATAATCACCTTTTCAAAAAAGTCAAATTTAATTAAAAAA
AAAAATGACAACAATAGGACCAATTGAAAATGAAATTAAAGAATTATTAACAAAAGAATT
AAATCCAATAAATTTAGAAATTATAAATGAAAGTTATATGCATAATGTACCAAAAGGATC
TGAATCACATTTTAAAGTTAAAATTGTTTCTGAAAAATTTGAAACTTTATCAATGATTGA
ACAACACAGATTAGTAAATGAAATTTTAAAAAATTTTATTGGAAATGGTAAAATACATGC
ATTAAGTATAACATCAAGAACTCCAACTCAATGGAAAAAAAAATAATCAAACAAAAATCA
ATGTTGATGATGATAAATCACCATCTTGTAAAGGAGGTTTNGTAAATAAAAAAAGAAANA
TTATAAATATG
sequence update 2001. 3.22
Translated Amino Acid sequence 
hlsnhthifykyhiitfskksnlikkkndnnrtn*k*n*riinkriksnkfrnyk*klya
*ctkri*itf*s*ncf*ki*nfind*ttqisk*nfkkfywkw*NTCIKYNIKNSNSMEKK
IIXQKSMLMMINHHLVKEVLVNKKRNN---

---TGPHLSNHTHIXYKYHIITFSKKSNLIKKKNDNNRTN*k*n*riinkriksnkfrny
k*klya*ctkri*itf*s*ncf*ki*nfind*ttqisk*nfkkfywkw*ntcikynikns
nsmekkiikqksmlmminhhlvkevx*ikkexl*i
Translated Amino Acid sequence (All Frames) 
Frame A:
hlsnhthifykyhiitfskksnlikkkndnnrtn*k*n*riinkriksnkfrnyk*klya
*ctkri*itf*s*ncf*ki*nfind*ttqisk*nfkkfywkw*NTCIKYNIKNSNSMEKK
IIXQKSMLMMINHHLVKEVLVNKKRNN---

---prvriyptthtyxintt*spfqksqi*lkkkmttigpieneikelltkelnpinlei
inesymhnvpkgseshfkvkivsekfetlsmieqhrlvneilknfigngkihalsitsrt
ptqwkkk*snknqc****itil*rrfxk*kkkxyky

Frame B:
iyptthtysintt*spfqksqi*lkkkmttigpieneikelltkelnpinleiinesymh
nvpkgseshfkvkivsekfetlsmieqhrlvneilknfigngkihalsitsrtptqwkkk
*sxknqc****itil*rrfw*ikkei---

---hgsafiqphthix*iphnhlfkkvkfn*kkk*qq*dqlkmklkny*qkn*iq*i*kl
*mkvicimyqkdlnhilklklflknlklyq*lnntd**mkf*killemvkymh*v*hqel
qlngkknnqtkinvdddkspsckggxvnkkrxiinm

Frame C:
fiqphthil*iphnhlfkkvkfn*kkk*qq*dqlkmklkny*qkn*iq*i*kl*mkvici
myqkdlnhilklklflknlklyq*lnntd**mkf*killemvkymh*v*hqelqlngkkn
nqxkinvdddkspsckggfgk*kkk*---

---TGPHLSNHTHIXYKYHIITFSKKSNLIKKKNDNNRTN*k*n*riinkriksnkfrny
k*klya*ctkri*itf*s*ncf*ki*nfind*ttqisk*nfkkfywkw*ntcikynikns
nsmekkiikqksmlmminhhlvkevx*ikkexl*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD833 (VSD833Q) /CSM/VS/VSD8-B/VSD833Q.Seq.d/                        733   0.0
VSE375 (VSE375Q) /CSM/VS/VSE3-D/VSE375Q.Seq.d/                        676   0.0
VSJ119 (VSJ119Q) /CSM/VS/VSJ1-A/VSJ119Q.Seq.d/                        611   e-174
VSI588 (VSI588Q) /CSM/VS/VSI5-D/VSI588Q.Seq.d/                         42   0.015
CHI376 (CHI376Q) /CSM/CH/CHI3-D/CHI376Q.Seq.d/                         42   0.015
VHH662 (VHH662Q) /CSM/VH/VHH6-C/VHH662Q.Seq.d/                         40   0.058
VHC465 (VHC465Q) /CSM/VH/VHC4-C/VHC465Q.Seq.d/                         40   0.058
SFJ877 (SFJ877Q) /CSM/SF/SFJ8-D/SFJ877Q.Seq.d/                         40   0.058
VHP770 (VHP770Q) /CSM/VH/VHP7-C/VHP770Q.Seq.d/                         38   0.23
VHP249 (VHP249Q) /CSM/VH/VHP2-C/VHP249Q.Seq.d/                         38   0.23
own update 2003. 7. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264625) Dictyostelium discoideum vegetative cDNA clone:VS...   361   e-169  5
(AU264624) Dictyostelium discoideum vegetative cDNA clone:VS...   361   e-163  4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   361   e-154  6
(AU263062) Dictyostelium discoideum vegetative cDNA clone:VS...   345   e-151  3
(AU269431) Dictyostelium discoideum vegetative cDNA clone:VS...   355   e-133  4
(AU269430) Dictyostelium discoideum vegetative cDNA clone:VS...   361   e-131  4
(BW642385) Dugesia ryukyuensis mRNA, clone: Dr_sW_024_C11, 5...    70   2e-07  1
(CK989904) BgHC-4.14 BgHC Biomphalaria glabrata cDNA 5', mRN...    62   4e-05  1
(CK989371) BgHC-7.87 BgHC Biomphalaria glabrata cDNA 5', mRN...    62   4e-05  1
(CK989206) BgHC-23.53 BgHC Biomphalaria glabrata cDNA 5', mR...    62   4e-05  1
dna update 2009. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC167635_1(BC167635|pid:none) Xenopus tropicalis hypothetical pr...   109   1e-22
AY341152_1(AY341152|pid:none) Anopheles gambiae clone L35_3 BolA...   107   4e-22
BC077096_1(BC077096|pid:none) Danio rerio zgc:101119, mRNA (cDNA...    99   2e-19
CR378665_177(CR378665|pid:none) Photobacterium profundum SS9; se...    96   2e-18
BT048027_1(BT048027|pid:none) Salmo salar clone ssal-rgb2-555-25...    91   5e-17
(Q3T138) RecName: Full=BolA-like protein 1;  &BC102140_1(BC10214...    89   2e-16
AX969343_1(AX969343|pid:none) Sequence 146 from Patent EP1104808.      88   5e-16
(Q9Y3E2) RecName: Full=BolA-like protein 1;  &AF151901_1(AF15190...    88   5e-16
CP000469_924(CP000469|pid:none) Shewanella sp. ANA-3, complete g...    87   1e-15
CP000446_930(CP000446|pid:none) Shewanella sp. MR-4, complete ge...    86   2e-15
protein update 2009. 7.30
PSORT 

 psg: 0.44  gvh: 0.13  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VSD833 is nuc
5' end seq. ID VSD833F
5' end seq. 
>VSD833F.Seq
CATTTATCCAACCACACACACATATTCTATAAATACCACATAATCACCTTTTCAAAAAAG
TCAAATTTAATTAAAAAAAAAAATGACAACAATAGGACCAATTGAAAATGAAATTAAAGA
ATTATTAACAAAAGAATTAAATCCAATAAATTTAGAAATTATAAATGAAAGTTATATGCA
TAATGTACCAAAAGGATCTGAATCACATTTTAAAGTTAAAATTGTTTCTGAAAAATTTGA
AACTTTATCAATGATTGAACAACACAGATTAGTAAATGAAATTTTAAAAAATTTTATTGG
AAATGGTAAAATACATGCATTAAGTATAACATCAAGAACTCCAACTCAATGGAAAAAAAA
ATAATCAANCAAAAATCAATGTTGATGATGATAAATCACCATCTTGTAAAGGAGGTTTTG
GTAAATAAAAAAAGAAATAAT----------
Length of 5' end seq. 441
3' end seq. ID VSD833Z
3' end seq. 
>VSD833Z.Seq
----------CCACGGGTCCGCATTTATCCAACCACACACACATATTNTATAAATACCAC
ATAATCACCTTTTCAAAAAAGTCAAATTTAATTAAAAAAAAAAATGACAACAATAGGACC
AATTGAAAATGAAATTAAAGAATTATTAACAAAAGAATTAAATCCAATAAATTTAGAAAT
TATAAATGAAAGTTATATGCATAATGTACCAAAAGGATCTGAATCACATTTTAAAGTTAA
AATTGTTTCTGAAAAATTTGAAACTTTATCAATGATTGAACAACACAGATTAGTAAATGA
AATTTTAAAAAATTTTATTGGAAATGGTAAAATACATGCATTAAGTATAACATCAAGAAC
TCCAACTCAATGGAAAAAAAAATAATCAAACAAAAATCAATGTTGATGATGATAAATCAC
CATCTTGTAAAGGAGGTTTNGTAAATAAAAAAAGAAANATTATAAATATG
Length of 3' end seq. 460
Connected seq. ID VSD833P
Connected seq. 
>VSD833P.Seq
CATTTATCCAACCACACACACATATTCTATAAATACCACATAATCACCTTTTCAAAAAAG
TCAAATTTAATTAAAAAAAAAAATGACAACAATAGGACCAATTGAAAATGAAATTAAAGA
ATTATTAACAAAAGAATTAAATCCAATAAATTTAGAAATTATAAATGAAAGTTATATGCA
TAATGTACCAAAAGGATCTGAATCACATTTTAAAGTTAAAATTGTTTCTGAAAAATTTGA
AACTTTATCAATGATTGAACAACACAGATTAGTAAATGAAATTTTAAAAAATTTTATTGG
AAATGGTAAAATACATGCATTAAGTATAACATCAAGAACTCCAACTCAATGGAAAAAAAA
ATAATCAANCAAAAATCAATGTTGATGATGATAAATCACCATCTTGTAAAGGAGGTTTTG
GTAAATAAAAAAAGAAATAAT----------CCACGGGTCCGCATTTATCCAACCACACA
CACATATTNTATAAATACCACATAATCACCTTTTCAAAAAAGTCAAATTTAATTAAAAAA
AAAAATGACAACAATAGGACCAATTGAAAATGAAATTAAAGAATTATTAACAAAAGAATT
AAATCCAATAAATTTAGAAATTATAAATGAAAGTTATATGCATAATGTACCAAAAGGATC
TGAATCACATTTTAAAGTTAAAATTGTTTCTGAAAAATTTGAAACTTTATCAATGATTGA
ACAACACAGATTAGTAAATGAAATTTTAAAAAATTTTATTGGAAATGGTAAAATACATGC
ATTAAGTATAACATCAAGAACTCCAACTCAATGGAAAAAAAAATAATCAAACAAAAATCA
ATGTTGATGATGATAAATCACCATCTTGTAAAGGAGGTTTNGTAAATAAAAAAAGAAANA
TTATAAATATG
Length of connected seq. 901
Full length Seq ID -
Full length Seq. -
Length of full length seq. -