VSD826
Library VS
(Link to library)
Clone ID VSD826
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD826F
(Link to Original site)
Representative DNA sequence
>VSD826 (VSD826Q) /CSM/VS/VSD8-B/VSD826Q.Seq.d/
AAAAAAAAAAAAAAGGCAAAATTAAAATTAAAAAATTATTAAATTTTAAAAAAAAAAXXX
XXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
KKKKGKIKIKKLLNFKKK---


Translated Amino Acid sequence (All Frames)
Frame A:
kkkkkaklklkny*ilkk---


Frame B:
kkkkrqn*n*kiikf*kk---


Frame C:
KKKKGKIKIKKLLNFKKK---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD826 (VSD826Q) /CSM/VS/VSD8-B/VSD826Q.Seq.d/ 70 3e-12
VSB527 (VSB527Q) /CSM/VS/VSB5-B/VSB527Q.Seq.d/ 66 5e-11
FC-AJ05 (FC-AJ05Q) /CSM/FC/FC-AJ/FC-AJ05Q.Se... 42 7e-04
VSF210 (VSF210Q) /CSM/VS/VSF2-A/VSF210Q.Seq.d/ 40 0.003
SSJ715 (SSJ715Q) /CSM/SS/SSJ7-A/SSJ715Q.Seq.d/ 40 0.003
SLE626 (SLE626Q) /CSM/SL/SLE6-B/SLE626Q.Seq.d/ 38 0.011
SLK224 (SLK224Q) /CSM/SL/SLK2-A/SLK224Q.Seq.d/ 38 0.011
SSB770 (SSB770Q) /CSM/SS/SSB7-C/SSB770Q.Seq.d/ 38 0.011
FC-AN22 (FC-AN22Q) /CSM/FC/FC-AN/FC-AN22Q.Se... 34 0.18
SLB481 (SLB481Q) /CSM/SL/SLB4-D/SLB481Q.Seq.d/ 32 0.71

own update 2000.12. 2
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] SetUpBlastSearch failed.
[blastall] ERROR: [000.000] BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 8.22
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 4,800,785
protein update 2009. 7.30
PSORT -
5' end seq. ID VSD826F
5' end seq.
>VSD826F.Seq
AAAAAAAAAAAAAAGGCAAAATTAAAATTAAAAAATTATTAAATTTTAAAAAAAAAA---
-------
Length of 5' end seq. 57
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -