VSD809
Library VS
(Link to library)
Clone ID VSD809
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10555-1
Original site URL
Representative seq. ID VSD809P
(Link to Original site)
Representative DNA sequence
>VSD809 (VSD809Q) /CSM/VS/VSD8-A/VSD809Q.Seq.d/
CAATAGTAAAGAAGAACCATGTGTACATCCATTATCTTGTCAAAAAGCCTATTCAAATGA
AAAAGATGTTGGAACTTGTCAAAATCTTTTCCAAAATGTTCTTGGCAGTGCTTGTGTTTC
AGATGAAAATTGTAACATTAATCAAGATTTATATTGTAATAAGAATATTTGTGAAAAATA
TGTTGAACCAATTCAAAATGGAAATTGTACAAATAATGACGATGTGTGCGATCAATTTCA
ACAATGTGGATGTGATAGTAAATGCAATGAATGGTTTTCTCCAAAAACTCGTGTAGATGT
TTTATTACCATTATATGATTGTTTAAATGAATATAATTGCAGTTTGGGTGGTAATTCATT
CTCCCTTTCATCTTGTTCTTCTAAAAATTGTAGATCACTAGTATGTAAATACTACCAAAC
AAGTTTGGGTACCAATGATGACACTTGTCCAAGTACCAAATATTCATTTGAAAAATACTG
TAATGACTCCTCAAAAATTAGTTATTCTTTATTCTCATTATTATTAATTTTAATAATTTC
TTTGTTATTTTAATXXXXXXXXXXCCACGCGTNCNGCAATAGTAAAGAAGAACCATGTGT
ACATCCATTATCTTGTCAAAAAGCCTATTCAAATGAAAAAGATGTTGGAACTTGTCAAAA
TCTTTTCCAAAATGTTCTTGGCAGTGCTTGTGTTTCAGATGAAAATTGTAACATTAATCA
AGATTTATATTGTAATAAGAATATTTGTGAAAAATATGTTGAACCAATTCAAAATGGAAA
TTGTACAAATAATGACGATGTGTGCGATCAATTTCAACAATGTGGATGTGATAGTAAATG
CAATGAATGGTTTTCTCCAAAAACTCGTGTAGATGTTTTATTACCATTATATGATTGTTT
NAATGAATATAATTGCAGTTTGGGTGGTAATTCATTCTCCCTTTCATCTTGTTCTTCTAA
AAATTGTAGATCACTAGTATGTAAANACTACCAAACAAGTTTGGGTACCAATGATGACAC
TTGTCCAAGTACCAAATATTCATTTGAAAAATACTGTAATNACTCCTCAAAAATTAGTTA
TTCTTTATTCTCATTATTATTAATTTTAATAATTT
sequence update 2001. 3.22
Translated Amino Acid sequence
q**rrtmctsiilskslfk*krcwnlsksfpkcswqclcfr*kl*h*srfil**eyl*ki
c*tnskwklyk**rcvrsistmwm***mq*mvfsknscrcfitii*lfk*i*lqfgw*fi
lpfilff*kl*itsm*ilpnkfgyq**hlskyqifi*kil**llkn*LFFILIIINFNNF
FVIL---

---HAXXNSKEEPCVHPLSCQKAYSNEKDVGTCQNLFQNVLGSACVSDENCNINQDLYCN
KNICEKYVEPIQNGNCTNNDDVCDQFQQCGCDSKCNEWFSPKTRVDVLLPLYDCXNEYNC
SLGGNSFSLSSCSSKNCRSLVCKXYQTSLGTNDDTCPSTKYSFEKYCNXSSKISYSLFSL
LLILII


Translated Amino Acid sequence (All Frames)
Frame A:
q**rrtmctsiilskslfk*krcwnlsksfpkcswqclcfr*kl*h*srfil**eyl*ki
c*tnskwklyk**rcvrsistmwm***mq*mvfsknscrcfitii*lfk*i*lqfgw*fi
lpfilff*kl*itsm*ilpnkfgyq**hlskyqifi*kil**llkn*LFFILIIINFNNF
FVIL---

---prvxq**rrtmctsiilskslfk*krcwnlsksfpkcswqclcfr*kl*h*srfil*
*eyl*kic*tnskwklyk**rcvrsistmwm***mq*mvfsknscrcfitii*lfx*i*l
qfgw*filpfilff*kl*itsm*xlpnkfgyq**hlskyqifi*kil*xllkn*lffili
iinfnn

Frame B:
nskeepcvhplscqkaysnekdvgtcqnlfqnvlgsacvsdencninqdlycnkniceky
vepiqngnctnnddvcdqfqqcgcdskcnewfspktrvdvllplydclneyncslggnsf
slsscsskncrslvckyyqtslgtnddtcpstkysfekycndsskisyslfsllliliis
llf*---

---HAXXNSKEEPCVHPLSCQKAYSNEKDVGTCQNLFQNVLGSACVSDENCNINQDLYCN
KNICEKYVEPIQNGNCTNNDDVCDQFQQCGCDSKCNEWFSPKTRVDVLLPLYDCXNEYNC
SLGGNSFSLSSCSSKNCRSLVCKXYQTSLGTNDDTCPSTKYSFEKYCNXSSKISYSLFSL
LLILII

Frame C:
ivkknhvyihylvkkpiqmkkmlelvkifskmflavlvfqmkivtlikiyivirifvknm
lnqfkmeivqimtmcainfnnvdvivnamngflqklv*mfyyhymiv*mniiavwvvihs
pfhlvllkivdh*yvnttkqvwvpmmtlvqvpnihlkntvmtpqklvilyshyy*f**fl
cyfn---

---trxaivkknhvyihylvkkpiqmkkmlelvkifskmflavlvfqmkivtlikiyivi
rifvknmlnqfkmeivqimtmcainfnnvdvivnamngflqklv*mfyyhymivxmniia
vwvvihspfhlvllkivdh*yvxttkqvwvpmmtlvqvpnihlkntvxtpqklvilyshy
y*f**f

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD809 (VSD809Q) /CSM/VS/VSD8-A/VSD809Q.Seq.d/ 2121 0.0
VFO649 (VFO649Q) /CSM/VF/VFO6-C/VFO649Q.Seq.d/ 975 0.0
SSJ359 (SSJ359Q) /CSM/SS/SSJ3-C/SSJ359Q.Seq.d/ 52 2e-05
SSI756 (SSI756Q) /CSM/SS/SSI7-C/SSI756Q.Seq.d/ 52 2e-05
SSC459 (SSC459Q) /CSM/SS/SSC4-C/SSC459Q.Seq.d/ 52 2e-05
SSC357 (SSC357Q) /CSM/SS/SSC3-C/SSC357Q.Seq.d/ 52 2e-05
SHJ588 (SHJ588Q) /CSM/SH/SHJ5-D/SHJ588Q.Seq.d/ 52 2e-05
CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/ 52 2e-05
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/ 52 2e-05
CHR809 (CHR809Q) /CSM/CH/CHR8-A/CHR809Q.Seq.d/ 52 2e-05

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU264591) Dictyostelium discoideum vegetative cDNA clone:VS... 1063 0.0 1
(AU264590) Dictyostelium discoideum vegetative cDNA clone:VS... 1051 0.0 1
(BJ436229) Dictyostelium discoideum cDNA clone:ddv30a14, 3' ... 924 0.0 2
(DE378600) Bombyx mori genomic DNA, BAC clone:1C9A. 50 0.039 2
(BX127410) Danio rerio genomic clone DKEY-76F2, genomic surv... 40 0.039 2
(AC136989) Mus musculus clone RP23-367N5, LOW-PASS SEQUENCE ... 42 0.042 3
(DU484374) 1098421054925 CHORI-243 Ovis aries genomic clone ... 52 0.048 1
(DU310355) 1098095046456 CHORI-243 Ovis aries genomic clone ... 52 0.048 1
(CL638554) CH243-1N9.SP6 CHORI-243 Ovis aries genomic clone ... 52 0.048 1
(DY448438) HSAA-aaa41c07.g1 UCI-11 Hydra vulgaris cDNA 5' si... 30 0.054 4
dna update 2009. 7.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q52085) RecName: Full=Cell-cell adhesion glycoprotein 64; ... 45 0.006
AX647833_1(AX647833|pid:none) Sequence 2025 from Patent EP1270724. 41 0.088
DQ351536_1(DQ351536|pid:none) Mytilus californianus foot protein... 40 0.11
AL022270_3(AL022270|pid:none) Caenorhabditis elegans Cosmid C26G... 40 0.15
D89711(D89711) protein F40E10.4 [imported] - Caenorhabditis eleg... 39 0.44
(A2ARV4) RecName: Full=Low-density lipoprotein receptor-related ... 38 0.74
AE014188_476(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.74
L04161_1(L04161|pid:none) Plasmodium falciparum clone Pfg377 Pfs... 38 0.74
AK049346_1(AK049346|pid:none) Mus musculus ES cells cDNA, RIKEN ... 38 0.74
AE014188_81(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 37 0.97
protein update 2009. 7.30
PSORT

psg: 1.02 gvh: 0.44 alm: 0.22 top: 0.47 tms: 0.07 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for VSD809 is end

5' end seq. ID VSD809F
5' end seq.
>VSD809F.Seq
CAATAGTAAAGAAGAACCATGTGTACATCCATTATCTTGTCAAAAAGCCTATTCAAATGA
AAAAGATGTTGGAACTTGTCAAAATCTTTTCCAAAATGTTCTTGGCAGTGCTTGTGTTTC
AGATGAAAATTGTAACATTAATCAAGATTTATATTGTAATAAGAATATTTGTGAAAAATA
TGTTGAACCAATTCAAAATGGAAATTGTACAAATAATGACGATGTGTGCGATCAATTTCA
ACAATGTGGATGTGATAGTAAATGCAATGAATGGTTTTCTCCAAAAACTCGTGTAGATGT
TTTATTACCATTATATGATTGTTTAAATGAATATAATTGCAGTTTGGGTGGTAATTCATT
CTCCCTTTCATCTTGTTCTTCTAAAAATTGTAGATCACTAGTATGTAAATACTACCAAAC
AAGTTTGGGTACCAATGATGACACTTGTCCAAGTACCAAATATTCATTTGAAAAATACTG
TAATGACTCCTCAAAAATTAGTTATTCTTTATTCTCATTATTATTAATTTTAATAATTTC
TTTGTTATTTTAAT----------
Length of 5' end seq. 554
3' end seq. ID VSD809Z
3' end seq.
>VSD809Z.Seq
----------CCACGCGTNCNGCAATAGTAAAGAAGAACCATGTGTACATCCATTATCTT
GTCAAAAAGCCTATTCAAATGAAAAAGATGTTGGAACTTGTCAAAATCTTTTCCAAAATG
TTCTTGGCAGTGCTTGTGTTTCAGATGAAAATTGTAACATTAATCAAGATTTATATTGTA
ATAAGAATATTTGTGAAAAATATGTTGAACCAATTCAAAATGGAAATTGTACAAATAATG
ACGATGTGTGCGATCAATTTCAACAATGTGGATGTGATAGTAAATGCAATGAATGGTTTT
CTCCAAAAACTCGTGTAGATGTTTTATTACCATTATATGATTGTTTNAATGAATATAATT
GCAGTTTGGGTGGTAATTCATTCTCCCTTTCATCTTGTTCTTCTAAAAATTGTAGATCAC
TAGTATGTAAANACTACCAAACAAGTTTGGGTACCAATGATGACACTTGTCCAAGTACCA
AATATTCATTTGAAAAATACTGTAATNACTCCTCAAAAATTAGTTATTCTTTATTCTCAT
TATTATTAATTTTAATAATTT
Length of 3' end seq. 551
Connected seq. ID VSD809P
Connected seq.
>VSD809P.Seq
CAATAGTAAAGAAGAACCATGTGTACATCCATTATCTTGTCAAAAAGCCTATTCAAATGA
AAAAGATGTTGGAACTTGTCAAAATCTTTTCCAAAATGTTCTTGGCAGTGCTTGTGTTTC
AGATGAAAATTGTAACATTAATCAAGATTTATATTGTAATAAGAATATTTGTGAAAAATA
TGTTGAACCAATTCAAAATGGAAATTGTACAAATAATGACGATGTGTGCGATCAATTTCA
ACAATGTGGATGTGATAGTAAATGCAATGAATGGTTTTCTCCAAAAACTCGTGTAGATGT
TTTATTACCATTATATGATTGTTTAAATGAATATAATTGCAGTTTGGGTGGTAATTCATT
CTCCCTTTCATCTTGTTCTTCTAAAAATTGTAGATCACTAGTATGTAAATACTACCAAAC
AAGTTTGGGTACCAATGATGACACTTGTCCAAGTACCAAATATTCATTTGAAAAATACTG
TAATGACTCCTCAAAAATTAGTTATTCTTTATTCTCATTATTATTAATTTTAATAATTTC
TTTGTTATTTTAAT----------CCACGCGTNCNGCAATAGTAAAGAAGAACCATGTGT
ACATCCATTATCTTGTCAAAAAGCCTATTCAAATGAAAAAGATGTTGGAACTTGTCAAAA
TCTTTTCCAAAATGTTCTTGGCAGTGCTTGTGTTTCAGATGAAAATTGTAACATTAATCA
AGATTTATATTGTAATAAGAATATTTGTGAAAAATATGTTGAACCAATTCAAAATGGAAA
TTGTACAAATAATGACGATGTGTGCGATCAATTTCAACAATGTGGATGTGATAGTAAATG
CAATGAATGGTTTTCTCCAAAAACTCGTGTAGATGTTTTATTACCATTATATGATTGTTT
NAATGAATATAATTGCAGTTTGGGTGGTAATTCATTCTCCCTTTCATCTTGTTCTTCTAA
AAATTGTAGATCACTAGTATGTAAANACTACCAAACAAGTTTGGGTACCAATGATGACAC
TTGTCCAAGTACCAAATATTCATTTGAAAAATACTGTAATNACTCCTCAAAAATTAGTTA
TTCTTTATTCTCATTATTATTAATTTTAATAATTT
Length of connected seq. 1105
Full length Seq ID -
Full length Seq. -
Length of full length seq. -