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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD808
Library VS
(Link to library)
Clone ID VSD808
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16512-1
Original site URL
Representative seq. ID VSD808P
(Link to Original site)
Representative DNA sequence 
>VSD808 (VSD808Q) /CSM/VS/VSD8-A/VSD808Q.Seq.d/
AAATATTACTGATAATGATAATATACAGGATTTACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACA
ACAACAAACTTCTNATTCATCATTTGAACCATTTTTAAAGAAATTAAAAGAGAATCAATT
NTTGAANAGGGAGAAATCCTCTGAAAAAAGTTTAGATAAAGTTTTAAAAAAAGAAAANTC
TACTGATAAAAATTTAGATAAATCATCATCATTAAAAAAAGAAAAGTCTGATAGAATATT
AAAAAAAGAAAAATCAACTGATAAAAATTTAGACAAGTTAAAGAAAAAGGAAATTGATGG
CACCATNACTACTACAATAACAACAACANCTGATCAAATTACACCTGATACGAATTCCTC
CTCAAATTGATTACTTTAATAAAAAAAAAAXXXXXXXXXXCCACGCGGCNGNAATATTAC
TGATAATGATAATANACAGGATTTACAACAACANCANCANCAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAAAC
TTCTCATTCATCATTTGAACCATTTTTAAAGAAATTAAAAGAGAATCAATTATTGAAAAG
GGAGAAATCCTCTGAAAAAAGTTTAGATAAAGTTTTAAAAAAAGAAAAATCTACTGATAA
AAATTTAGATAAATCATCATCATTAAAAAAAGAAAAGTCTGATAGAATATTAAAAAAAGA
AAAATCAACTGATAAAAATTTAGACAAGTTAAAGAAAAAGGAAATTGATGGCACCATCAC
TACTACAATAACAACAACAACGATCAAATTACACCGATACGAATTCCTCCTCAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
illimiiyriynnnnnnnnnnnnnnnnnnnnnnnnnsnnnnkllihhlnhf*rn*krinx
*xgrnplkkv*ikf*kkkxlliki*inhhh*kkksliey*kkknqliki*ts*rkrklma
pxllq*QQXLIKLHLIRIPPQIDYFNKKK---

---PRGXNITDNDNXQDLQQXXXQQQQQQQQQQQQQQQQQQQQQQQQQQTSHSSFEPFLK
KLKENQLLKREKSSEKSLDKVLKKEKSTDKNLDKSSSLKKEKSDRILKKEKSTDKNLDKL
KKKEIDGTITTTITTTTIKLHRYEFLLK
Translated Amino Acid sequence (All Frames) 
Frame A:
kyy****ytgfttttttttttttttttttttttttttattttnfxfii*tifkeikresi
xexgeil*kkfr*sfkkrkxy**kfr*iiiikkrkv**nikkrkin**kfrqvkekgn*w
hhxyynnnnx*snyt*yefllklitlikkk---

---PRGXNITDNDNXQDLQQXXXQQQQQQQQQQQQQQQQQQQQQQQQQQTSHSSFEPFLK
KLKENQLLKREKSSEKSLDKVLKKEKSTDKNLDKSSSLKKEKSDRILKKEKSTDKNLDKL
KKKEIDGTITTTITTTTIKLHRYEFLLK

Frame B:
nitdndniqdlqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqtsxssfepflkklkenqx
lxreksseksldkvlkkexstdknldkssslkkeksdrilkkekstdknldklkkkeidg
txtttitttxdqitpdtnsssn*ll**kk---

---haaxillimiixriynnxxxnnnnnnnnnnnnnnnnnnnnsnnnnkllihhlnhf*r
n*kriny*kgrnplkkv*ikf*kkknlliki*inhhh*kkksliey*kkknqliki*ts*
rkrklmapsllq*qqqrsnytdtnsssn

Frame C:
illimiiyriynnnnnnnnnnnnnnnnnnnnnnnnnsnnnnkllihhlnhf*rn*krinx
*xgrnplkkv*ikf*kkkxlliki*inhhh*kkksliey*kkknqliki*ts*rkrklma
pxllq*QQXLIKLHLIRIPPQIDYFNKKK---

---trxxyy****xtgftttxxxttttttttttttttttttttattttnfsfii*tifke
ikresiiekgeil*kkfr*sfkkrkiy**kfr*iiiikkrkv**nikkrkin**kfrqvk
ekgn*whhhyynnnnndqitpirippq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE830 (VSE830Q) /CSM/VS/VSE8-B/VSE830Q.Seq.d/                        240   3e-62
VSD808 (VSD808Q) /CSM/VS/VSD8-A/VSD808Q.Seq.d/                        240   3e-62
VSK269 (VSK269Q) /CSM/VS/VSK2-C/VSK269Q.Seq.d/                        149   9e-35
VFN608 (VFN608Q) /CSM/VF/VFN6-A/VFN608Q.Seq.d/                         44   0.004
VFJ333 (VFJ333Q) /CSM/VF/VFJ3-B/VFJ333Q.Seq.d/                         44   0.004
VSH135 (VSH135Q) /CSM/VS/VSH1-B/VSH135Q.Seq.d/                         42   0.014
VSD155 (VSD155Q) /CSM/VS/VSD1-C/VSD155Q.Seq.d/                         42   0.014
VHC486 (VHC486Q) /CSM/VH/VHC4-D/VHC486Q.Seq.d/                         42   0.014
VFO865 (VFO865Q) /CSM/VF/VFO8-C/VFO865Q.Seq.d/                         42   0.014
VFO856 (VFO856Q) /CSM/VF/VFO8-C/VFO856Q.Seq.d/                         42   0.014
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264589) Dictyostelium discoideum vegetative cDNA clone:VS...   147   4e-80  3
(AU263410) Dictyostelium discoideum vegetative cDNA clone:VS...   161   6e-79  3
(AU264588) Dictyostelium discoideum vegetative cDNA clone:VS...   161   7e-79  3
(AU270913) Dictyostelium discoideum vegetative cDNA clone:VS...   147   9e-31  1
(AU270912) Dictyostelium discoideum vegetative cDNA clone:VS...   147   9e-31  1
(CU633837) Zebrafish DNA sequence from clone CH1073-280O20 i...    46   0.001  2
(FE080610) LV_GL_RA18P21r Litopenaeus vannamei gills cDNA li...    44   0.048  2
(FE080788) LV_GL_RA01F14f Litopenaeus vannamei gills cDNA li...    44   0.052  2
(FE080787) LV_GL_RA18H08r Litopenaeus vannamei gills cDNA li...    44   0.052  2
(AC176994) Strongylocentrotus purpuratus clone R3-1103A15, W...    40   0.095  3
dna update 2009. 7.27
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 445,167,498
protein update 2009. 7.30
PSORT 

 psg: 0.71  gvh: 0.31  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.05
 nuc: 0.28  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VSD808 is nuc
5' end seq. ID VSD808F
5' end seq. 
>VSD808F.Seq
AAATATTACTGATAATGATAATATACAGGATTTACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACA
ACAACAAACTTCTNATTCATCATTTGAACCATTTTTAAAGAAATTAAAAGAGAATCAATT
NTTGAANAGGGAGAAATCCTCTGAAAAAAGTTTAGATAAAGTTTTAAAAAAAGAAAANTC
TACTGATAAAAATTTAGATAAATCATCATCATTAAAAAAAGAAAAGTCTGATAGAATATT
AAAAAAAGAAAAATCAACTGATAAAAATTTAGACAAGTTAAAGAAAAAGGAAATTGATGG
CACCATNACTACTACAATAACAACAACANCTGATCAAATTACACCTGATACGAATTCCTC
CTCAAATTGATTACTTTAATAAAAAAAAAA----------
Length of 5' end seq. 450
3' end seq. ID VSD808Z
3' end seq. 
>VSD808Z.Seq
----------CCACGCGGCNGNAATATTACTGATAATGATAATANACAGGATTTACAACA
ACANCANCANCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAGCAACAACAACAACAAACTTCTCATTCATCATTTGAACCATTTTTAAA
GAAATTAAAAGAGAATCAATTATTGAAAAGGGAGAAATCCTCTGAAAAAAGTTTAGATAA
AGTTTTAAAAAAAGAAAAATCTACTGATAAAAATTTAGATAAATCATCATCATTAAAAAA
AGAAAAGTCTGATAGAATATTAAAAAAAGAAAAATCAACTGATAAAAATTTAGACAAGTT
AAAGAAAAAGGAAATTGATGGCACCATCACTACTACAATAACAACAACAACGATCAAATT
ACACCGATACGAATTCCTCCTCAAAT
Length of 3' end seq. 436
Connected seq. ID VSD808P
Connected seq. 
>VSD808P.Seq
AAATATTACTGATAATGATAATATACAGGATTTACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACA
ACAACAAACTTCTNATTCATCATTTGAACCATTTTTAAAGAAATTAAAAGAGAATCAATT
NTTGAANAGGGAGAAATCCTCTGAAAAAAGTTTAGATAAAGTTTTAAAAAAAGAAAANTC
TACTGATAAAAATTTAGATAAATCATCATCATTAAAAAAAGAAAAGTCTGATAGAATATT
AAAAAAAGAAAAATCAACTGATAAAAATTTAGACAAGTTAAAGAAAAAGGAAATTGATGG
CACCATNACTACTACAATAACAACAACANCTGATCAAATTACACCTGATACGAATTCCTC
CTCAAATTGATTACTTTAATAAAAAAAAAA----------CCACGCGGCNGNAATATTAC
TGATAATGATAATANACAGGATTTACAACAACANCANCANCAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAAAC
TTCTCATTCATCATTTGAACCATTTTTAAAGAAATTAAAAGAGAATCAATTATTGAAAAG
GGAGAAATCCTCTGAAAAAAGTTTAGATAAAGTTTTAAAAAAAGAAAAATCTACTGATAA
AAATTTAGATAAATCATCATCATTAAAAAAAGAAAAGTCTGATAGAATATTAAAAAAAGA
AAAATCAACTGATAAAAATTTAGACAAGTTAAAGAAAAAGGAAATTGATGGCACCATCAC
TACTACAATAACAACAACAACGATCAAATTACACCGATACGAATTCCTCCTCAAAT
Length of connected seq. 886
Full length Seq ID -
Full length Seq. -
Length of full length seq. -