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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD805
Library VS
(Link to library)
Clone ID VSD805
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04632-1
Original site URL
Representative seq. ID VSD805P
(Link to Original site)
Representative DNA sequence 
>VSD805 (VSD805Q) /CSM/VS/VSD8-A/VSD805Q.Seq.d/
CACATATTATTATTTAGTTAGTAATAGTTATAAAACAAATTGTATATTAATTTAAAATCA
AATAAAAGAAATGGACGTTCAAACTAAATACGGAGCTGGTCAAAATAAAGTATTAGGTGG
TGCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGATATTGCTCTCCCAGAATTAAATCC
ATCAGTACCACAAGCAATTCAAAGAGCCAGAAATGCTTTGAAAATGACACAAAAAGAATT
AGCATTTAAAATTAATGAAAGACCAGGTGTAATCAATGAATATGAAAGTGGTTCTGCCAT
CCCAAGTCAAGCTGTTCTTTCAAAATTAGAGAAGGCTTTGAATGTTAAATTAAGAGGAAA
AGAAATTGGCAAACCACTCAAATAAATAGCCAATGTTCAATTAAGAGCCCACTTTAATTA
TTGAAAGGATTAATCAAATATAGAAATATAXXXXXXXXXXCACATATTATTATTTAGTTA
GTAATAGTTATAAAACAAATTGTATATTAATTTAAAATCAAATAAAAGAAATGGACGTTC
AAACTAAATACGGAGCTGGTCAAAATAAAGTATTAGGTGGTGCCAATCAAAAAAAGATTG
TTGAATCTGAAGAAGATATTGCTCTCCCAGAATTAAATCCATCAGTACCACAAGCAATTC
AAAGAGCCAGAAATGCTTTGAAAATGACACAAAAAGAATTAGCATTTAAAATTAATGAAA
GACCAGGTGTAATCAATGAATATGAAAGTGGTTCTGCCATCCCAAGTCAAGCTGTTCTTT
CAAAATTAGAGAAGGCTTTGAATGTTAAATTAAGAGGAAAAGAAATTGGCAAACCACTCA
AATAAATAGCCAATGTTCAATTAAGAGCCCACTTTAATTATTGAAAGGATTAATCAAATA
TAGAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
hillfs***l*nklyinlksnkrngrsn*irswsk*sirwcqskkdc*i*rrycspriks
isttsnsksqkcfendtkrisi*n**ktrcnq*i*kwfchpksscsfkiregfec*ikrk
rnwqttqinsqcsikspl*LLKGLIKYRNI---

---TYYYLVSNSYKTNCILI*nqikemdvqtkygagqnkvlgganqkkiveseedialpe
lnpsvpqaiqrarnalkmtqkelafkinerpgvineyesgsaipsqavlsklekalnvkl
rgkeigkplk*ianvqlrahfny*kd*snie
Translated Amino Acid sequence (All Frames) 
Frame A:
hillfs***l*nklyinlksnkrngrsn*irswsk*sirwcqskkdc*i*rrycspriks
isttsnsksqkcfendtkrisi*n**ktrcnq*i*kwfchpksscsfkiregfec*ikrk
rnwqttqinsqcsikspl*LLKGLIKYRNI---

---hillfs***l*nklyinlksnkrngrsn*irswsk*sirwcqskkdc*i*rrycspr
iksisttsnsksqkcfendtkrisi*n**ktrcnq*i*kwfchpksscsfkiregfec*i
krkrnwqttqinsqcsikspl*llkglikyr

Frame B:
tyyylvsnsyktncili*nqikemdvqtkygagqnkvlgganqkkiveseedialpelnp
svpqaiqrarnalkmtqkelafkinerpgvineyesgsaipsqavlsklekalnvklrgk
eigkplk*ianvqlrahfny*kd*sniei---

---TYYYLVSNSYKTNCILI*nqikemdvqtkygagqnkvlgganqkkiveseedialpe
lnpsvpqaiqrarnalkmtqkelafkinerpgvineyesgsaipsqavlsklekalnvkl
rgkeigkplk*ianvqlrahfny*kd*snie

Frame C:
hiii*lvivikqivy*fkik*kkwtfklntelvkiky*vvpikkrllnlkkillsqn*ih
qyhkqfkepeml*k*hkkn*hlklmkdqv*smnmkvvlpsqvklffqn*rrl*mln*eek
klanhsnk*pmfn*eptliierinqi*ky---

---hiii*lvivikqivy*fkik*kkwtfklntelvkiky*vvpikkrllnlkkillsqn
*ihqyhkqfkepeml*k*hkkn*hlklmkdqv*smnmkvvlpsqvklffqn*rrl*mln*
eekklanhsnk*pmfn*eptliierinqi*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD805 (VSD805Q) /CSM/VS/VSD8-A/VSD805Q.Seq.d/                       1651   0.0
SSB862 (SSB862Q) /CSM/SS/SSB8-C/SSB862Q.Seq.d/                        850   0.0
VSJ733 (VSJ733Q) /CSM/VS/VSJ7-B/VSJ733Q.Seq.d/                        835   0.0
VSF244 (VSF244Q) /CSM/VS/VSF2-B/VSF244Q.Seq.d/                        789   0.0
VSE783 (VSE783Q) /CSM/VS/VSE7-D/VSE783Q.Seq.d/                        410   e-113
VHC188 (VHC188Q) /CSM/VH/VHC1-D/VHC188Q.Seq.d/                         38   0.23
VHB648 (VHB648Q) /CSM/VH/VHB6-B/VHB648Q.Seq.d/                         38   0.23
SLH381 (SLH381Q) /CSM/SL/SLH3-D/SLH381Q.Seq.d/                         38   0.23
FC-BG24 (FC-BG24Q) /CSM/FC/FC-BG/FC-BG24Q.Seq.d/                       38   0.23
VSE471 (VSE471Q) /CSM/VS/VSE4-C/VSE471Q.Seq.d/                         36   0.90
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264584) Dictyostelium discoideum vegetative cDNA clone:VS...   624   0.0    2
(X15385) Dictyostelium discoideum H7 gene mRNA.                   617   0.0    2
(AU264585) Dictyostelium discoideum vegetative cDNA clone:VS...   615   0.0    2
(AU270385) Dictyostelium discoideum vegetative cDNA clone:VS...   624   0.0    2
(AU264930) Dictyostelium discoideum vegetative cDNA clone:VS...   563   0.0    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   208   0.0    11
(AU071597) Dictyostelium discoideum slug cDNA, clone SSB862.      254   e-115  2
(AU263375) Dictyostelium discoideum vegetative cDNA clone:VS...   410   e-110  1
(AU264929) Dictyostelium discoideum vegetative cDNA clone:VS...   234   7e-85  2
(AU036950) Dictyostelium discoideum slug cDNA, clone SSB862.       76   3e-09  1
dna update 2009. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14327) RecName: Full=Vegetative-specific protein H7;                202   1e-50
S07568(S07568) protein H7 - slime mold (Dictyostelium discoideum...   201   4e-50
(Q752P7) RecName: Full=Multiprotein-bridging factor 1;  &AE01681...    98   4e-19
FM992688_97(FM992688|pid:none) Candida dubliniensis CD36 chromos...    97   1e-18
FN392322_749(FN392322|pid:none) Pichia pastoris GS115 chromosome...    96   2e-18
(Q6FJN0) RecName: Full=Multiprotein-bridging factor 1;  &CR38095...    95   3e-18
(Q6CIP4) RecName: Full=Multiprotein-bridging factor 1;  &CR38212...    94   5e-18
CU928175_34(CU928175|pid:none) Zygosaccharomyces rouxii strain C...    92   2e-17
BT079498_1(BT079498|pid:none) Esox lucius clone eluc-evq-507-345...    92   2e-17
BT074338_1(BT074338|pid:none) Oncorhynchus mykiss clone omyk-evo...    92   3e-17
protein update 2009. 7.30
PSORT 

 psg: 0.84  gvh: 0.24  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: cytoplasmic

>> prediction for VSD805 is mit
5' end seq. ID VSD805F
5' end seq. 
>VSD805F.Seq
CACATATTATTATTTAGTTAGTAATAGTTATAAAACAAATTGTATATTAATTTAAAATCA
AATAAAAGAAATGGACGTTCAAACTAAATACGGAGCTGGTCAAAATAAAGTATTAGGTGG
TGCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGATATTGCTCTCCCAGAATTAAATCC
ATCAGTACCACAAGCAATTCAAAGAGCCAGAAATGCTTTGAAAATGACACAAAAAGAATT
AGCATTTAAAATTAATGAAAGACCAGGTGTAATCAATGAATATGAAAGTGGTTCTGCCAT
CCCAAGTCAAGCTGTTCTTTCAAAATTAGAGAAGGCTTTGAATGTTAAATTAAGAGGAAA
AGAAATTGGCAAACCACTCAAATAAATAGCCAATGTTCAATTAAGAGCCCACTTTAATTA
TTGAAAGGATTAATCAAATATAGAAATATA----------
Length of 5' end seq. 450
3' end seq. ID VSD805Z
3' end seq. 
>VSD805Z.Seq
----------CACATATTATTATTTAGTTAGTAATAGTTATAAAACAAATTGTATATTAA
TTTAAAATCAAATAAAAGAAATGGACGTTCAAACTAAATACGGAGCTGGTCAAAATAAAG
TATTAGGTGGTGCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGATATTGCTCTCCCAG
AATTAAATCCATCAGTACCACAAGCAATTCAAAGAGCCAGAAATGCTTTGAAAATGACAC
AAAAAGAATTAGCATTTAAAATTAATGAAAGACCAGGTGTAATCAATGAATATGAAAGTG
GTTCTGCCATCCCAAGTCAAGCTGTTCTTTCAAAATTAGAGAAGGCTTTGAATGTTAAAT
TAAGAGGAAAAGAAATTGGCAAACCACTCAAATAAATAGCCAATGTTCAATTAAGAGCCC
ACTTTAATTATTGAAAGGATTAATCAAATATAGAA
Length of 3' end seq. 445
Connected seq. ID VSD805P
Connected seq. 
>VSD805P.Seq
CACATATTATTATTTAGTTAGTAATAGTTATAAAACAAATTGTATATTAATTTAAAATCA
AATAAAAGAAATGGACGTTCAAACTAAATACGGAGCTGGTCAAAATAAAGTATTAGGTGG
TGCCAATCAAAAAAAGATTGTTGAATCTGAAGAAGATATTGCTCTCCCAGAATTAAATCC
ATCAGTACCACAAGCAATTCAAAGAGCCAGAAATGCTTTGAAAATGACACAAAAAGAATT
AGCATTTAAAATTAATGAAAGACCAGGTGTAATCAATGAATATGAAAGTGGTTCTGCCAT
CCCAAGTCAAGCTGTTCTTTCAAAATTAGAGAAGGCTTTGAATGTTAAATTAAGAGGAAA
AGAAATTGGCAAACCACTCAAATAAATAGCCAATGTTCAATTAAGAGCCCACTTTAATTA
TTGAAAGGATTAATCAAATATAGAAATATA----------CACATATTATTATTTAGTTA
GTAATAGTTATAAAACAAATTGTATATTAATTTAAAATCAAATAAAAGAAATGGACGTTC
AAACTAAATACGGAGCTGGTCAAAATAAAGTATTAGGTGGTGCCAATCAAAAAAAGATTG
TTGAATCTGAAGAAGATATTGCTCTCCCAGAATTAAATCCATCAGTACCACAAGCAATTC
AAAGAGCCAGAAATGCTTTGAAAATGACACAAAAAGAATTAGCATTTAAAATTAATGAAA
GACCAGGTGTAATCAATGAATATGAAAGTGGTTCTGCCATCCCAAGTCAAGCTGTTCTTT
CAAAATTAGAGAAGGCTTTGAATGTTAAATTAAGAGGAAAAGAAATTGGCAAACCACTCA
AATAAATAGCCAATGTTCAATTAAGAGCCCACTTTAATTATTGAAAGGATTAATCAAATA
TAGAA
Length of connected seq. 895
Full length Seq ID -
Full length Seq. -
Length of full length seq. -